RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 C12orf74Q32Q52 190 aa10.41□□□□□ -0.74
SHKBP1-211ENST00000595945 C20orf78Q9BR46 151 aa10.41□□□□□ -0.74
SHKBP1-211ENST00000595945 ZMAT4Q9H898 229 aa10.41□□□□□ -0.74
SHKBP1-211ENST00000595945 PRKDCP78527 4128 aaKnown RBP10.41□□□□□ -0.74
SHKBP1-211ENST00000595945 IGLV2-18A0A075B6J9 118 aa10.4□□□□□ -0.74
SHKBP1-211ENST00000595945 NIT2Q9NQR4 276 aa10.4□□□□□ -0.74
SHKBP1-211ENST00000595945 TRBV6-4A0A1B0GX49 114 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 LINC01546A6NGU7 62 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 C5orf52A6NGY3 159 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 K7EQD1 137 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 P0DMU3 169 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 FAM231AP0DMU4 169 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 FAM231CP0DMU5 169 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 ESDP10768 282 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 HOXA5P20719 270 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 POLR2KP53803 58 aaKnown RBP10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 SUMO2P61956 95 aaKnown RBP10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 BAGE3Q86Y29 109 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 MAP1LC3AQ9H492 121 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 Q9UF83 564 aa10.39□□□□□ -0.75
SHKBP1-211ENST00000595945 TRGV4A0A0C4DH28 118 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 TRBV10-1A0A0K0K1A3 114 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 NUPR1O60356 82 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 SERF1AO75920 110 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 ATP5G1P05496 136 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 IFI27P40305 119 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 NIT1Q86X76 327 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 Q8N8P6 123 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 SLC25A29Q8N8R3 303 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 NEXN-AS1Q8NBZ9 246 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 DNAJC30Q96LL9 226 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 SMIM2Q9BVW6 85 aa10.38□□□□□ -0.75
SHKBP1-211ENST00000595945 LOC389332A0A1B0GUA5 103 aa10.37□□□□□ -0.75
SHKBP1-211ENST00000595945 S100A6P06703 90 aa10.37□□□□□ -0.75
SHKBP1-211ENST00000595945 NHLRC4P0CG21 123 aaPredicted RBP10.37□□□□□ -0.75
SHKBP1-211ENST00000595945 SNRPEP62304 92 aaKnown RBP10.37□□□□□ -0.75
SHKBP1-211ENST00000595945 TMEM70Q9BUB7 260 aa10.37□□□□□ -0.75
SHKBP1-211ENST00000595945 ST20Q9HBF5 79 aa10.37□□□□□ -0.75
SHKBP1-211ENST00000595945 NXT2Q9NPJ8 142 aaKnown RBP10.37□□□□□ -0.75
SHKBP1-211ENST00000595945 SDHAF1A6NFY7 115 aa10.36□□□□□ -0.75
SHKBP1-211ENST00000595945 CRYBA4P53673 196 aa10.36□□□□□ -0.75
SHKBP1-211ENST00000595945 PRSS3P2Q8NHM4 247 aa10.36□□□□□ -0.75
SHKBP1-211ENST00000595945 CHCHD1Q96BP2 118 aaKnown RBP10.36□□□□□ -0.75
SHKBP1-211ENST00000595945 FBN3Q75N90 2809 aa10.36□□□□□ -0.75
SHKBP1-211ENST00000595945 TRBV27A0A0K0K1C4 114 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 LINC00614P0C842 121 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 LINC00694P0DN24 101 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 PMCHP20382 165 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 RHOHQ15669 191 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 HIST3H2BBQ8N257 126 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 PRO0255Q9UI72 69 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 HHLA3Q9XRX5 114 aa10.35□□□□□ -0.75
SHKBP1-211ENST00000595945 VCYO14598 125 aa10.34□□□□□ -0.75
SHKBP1-211ENST00000595945 RNASEKQ6P5S7 137 aaKnown RBP10.34□□□□□ -0.75
SHKBP1-211ENST00000595945 FA2HQ7L5A8 372 aa10.34□□□□□ -0.75
SHKBP1-211ENST00000595945 C11orf45Q8TAV5 145 aa10.34□□□□□ -0.75
SHKBP1-211ENST00000595945 TNFRSF18Q9Y5U5 241 aa10.34□□□□□ -0.75
SHKBP1-211ENST00000595945 NANOS2P60321 138 aaKnown RBP10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 UBE2D3P61077 147 aa10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 UBE2D2P62837 147 aa10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 RPL36AP83881 106 aaKnown RBP10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 Q6ZTC4 211 aa10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 NEGR1Q7Z3B1 354 aa10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 RPL36ALQ969Q0 106 aaKnown RBP10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 VSIG2Q96IQ7 327 aa10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 PRADC1Q9BSG0 188 aa10.33□□□□□ -0.76
SHKBP1-211ENST00000595945 TRBV7-3A0A075B6L6 115 aa10.32□□□□□ -0.76
SHKBP1-211ENST00000595945 LOC100131303A0A0U1RQF7 123 aa10.32□□□□□ -0.76
SHKBP1-211ENST00000595945 K7EMI3 77 aa10.32□□□□□ -0.76
SHKBP1-211ENST00000595945 ZNRF2Q8NHG8 242 aa10.32□□□□□ -0.76
SHKBP1-211ENST00000595945 AP5S1Q9NUS5 200 aa10.32□□□□□ -0.76
SHKBP1-211ENST00000595945 GAGE12JA6NER3 117 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 IFITM10A6NMD0 228 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 F5H768 121 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 PAX4O43316 350 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 TSHBP01222 138 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 GAGE1Q13065 139 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 GAGE4Q13068 117 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 GAGE5Q13069 117 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 GAGE13Q4V321 117 aa10.31□□□□□ -0.76
SHKBP1-211ENST00000595945 A0A096LNJ9 63 aa10.3□□□□□ -0.76
SHKBP1-211ENST00000595945 I3L3M4 83 aa10.3□□□□□ -0.76
SHKBP1-211ENST00000595945 TCAPO15273 167 aa10.3□□□□□ -0.76
SHKBP1-211ENST00000595945 HSBP1O75506 76 aa10.3□□□□□ -0.76
SHKBP1-211ENST00000595945 LAGE3Q14657 143 aa10.3□□□□□ -0.76
SHKBP1-211ENST00000595945 PACRGQ96M98 296 aaPredicted RBP10.3□□□□□ -0.76
SHKBP1-211ENST00000595945 TRAV26-1A0A087WT03 109 aa10.29□□□□□ -0.76
SHKBP1-211ENST00000595945 IGHV1-24A0A0C4DH33 117 aa10.29□□□□□ -0.76
SHKBP1-211ENST00000595945 GYPEP15421 78 aa10.29□□□□□ -0.76
SHKBP1-211ENST00000595945 HTN3P15516 51 aa10.29□□□□□ -0.76
SHKBP1-211ENST00000595945 PDZD11Q5EBL8 140 aa10.29□□□□□ -0.76
SHKBP1-211ENST00000595945 FAM19A2Q8N3H0 131 aa10.29□□□□□ -0.76
SHKBP1-211ENST00000595945 KIR2DL4Q99706 377 aa10.29□□□□□ -0.76
SHKBP1-211ENST00000595945 H3BNG1 76 aa10.28□□□□□ -0.76
SHKBP1-211ENST00000595945 FCER1GP30273 86 aa10.28□□□□□ -0.76
SHKBP1-211ENST00000595945 PMCHL1Q16048 86 aa10.28□□□□□ -0.76
SHKBP1-211ENST00000595945 ORMDL2Q53FV1 153 aa10.28□□□□□ -0.76
SHKBP1-211ENST00000595945 DAZ4Q86SG3 579 aaKnown RBP10.28□□□□□ -0.76
SHKBP1-211ENST00000595945 HIST1H2BLQ99880 126 aa10.28□□□□□ -0.76
SHKBP1-211ENST00000595945 DAZ3Q9NR90 486 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms