RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 Q8N814 137 aa7.35□□□□□ -1.23
LIG3-214ENST00000592244 DNAJC30Q96LL9 226 aa7.35□□□□□ -1.23
LIG3-214ENST00000592244 LRCOL1A6NCL2 159 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 TMEM250H0YL14 139 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 IGLV2-8P01709 118 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 CRPP02741 224 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 MGPP08493 103 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 IGLC6P0CF74 106 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 WDR73Q6P4I2 378 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 ALKAL2Q6UX46 152 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 SMIM15Q7Z3B0 74 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 NEXN-AS1Q8NBZ9 246 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 CHCHD5Q9BSY4 110 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 KLK12Q9UKR0 248 aa7.34□□□□□ -1.23
LIG3-214ENST00000592244 TRBV25-1A0A075B6N4 114 aa7.33□□□□□ -1.24
LIG3-214ENST00000592244 IGKV2D-24A0A075B6R9 120 aa7.33□□□□□ -1.24
LIG3-214ENST00000592244 GZMBP10144 247 aa7.33□□□□□ -1.24
LIG3-214ENST00000592244 UBE2WQ96B02 151 aa7.33□□□□□ -1.24
LIG3-214ENST00000592244 RPP21Q9H633 154 aaKnown RBP7.33□□□□□ -1.24
LIG3-214ENST00000592244 TRBV20OR9-2A0A075B6H5 130 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 C14orf177Q52M58 125 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 LYZL1Q6UWQ5 148 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 Q8N976 141 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 NUDT10Q8NFP7 164 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 NUDT11Q96G61 164 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 TMEM70Q9BUB7 260 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 C1orf43Q9BWL3 253 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 DPH3P1Q9H4G8 78 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 KIF25-AS1Q9Y6Z4 181 aa7.32□□□□□ -1.24
LIG3-214ENST00000592244 EPM2AB3EWF7 344 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 ANGP03950 147 aaKnown RBP7.31□□□□□ -1.24
LIG3-214ENST00000592244 NTF3P20783 257 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 FUSP35637 526 aaKnown RBP eCLIP7.31□□□□□ -1.24
LIG3-214ENST00000592244 TWIST1Q15672 202 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 RASL11AQ6T310 242 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 Q8N3U1 123 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 FRZBQ92765 325 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 BORCS7Q96B45 105 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 KRTAP17-1Q9BYP8 105 aa7.31□□□□□ -1.24
LIG3-214ENST00000592244 EIF5A2Q9GZV4 153 aaKnown RBP7.31□□□□□ -1.24
LIG3-214ENST00000592244 LRP1BQ9NZR2 4599 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 IGHV1-24A0A0C4DH33 117 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 A8MWL6 223 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 M0QY20 66 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 NDUFS6O75380 124 aaKnown RBP7.3□□□□□ -1.24
LIG3-214ENST00000592244 CTRLP40313 264 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 CEBPGP53567 150 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 KRTAP10-1P60331 282 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 C15orf54Q8N8G6 183 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 LYPD6BQ8NI32 183 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 OCC1Q8TAD7 63 aa7.3□□□□□ -1.24
LIG3-214ENST00000592244 RYR1P21817 5038 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 GATCO43716 136 aaKnown RBP7.29□□□□□ -1.24
LIG3-214ENST00000592244 MIAQ16674 131 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 IQCJQ1A5X6 159 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 SUMO4Q6EEV6 95 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 ATRAIDQ6UW56 229 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 TEX261Q6UWH6 196 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 BAALCQ8WXS3 180 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 CNFNQ9BYD5 112 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 RNASE7Q9H1E1 156 aaKnown RBP7.29□□□□□ -1.24
LIG3-214ENST00000592244 NIT2Q9NQR4 276 aa7.29□□□□□ -1.24
LIG3-214ENST00000592244 FAM229AH3BQW9 127 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 LECT2O14960 151 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 COTL1Q14019 142 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 MPV17L2Q567V2 206 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 FAM231DQ6ZW35 169 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 SMIM7Q9BQ49 75 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 TMEM243Q9BU79 118 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 PCLOQ9Y6V0 5065 aa7.28□□□□□ -1.24
LIG3-214ENST00000592244 K7EN84 100 aa7.27□□□□□ -1.25
LIG3-214ENST00000592244 UBE2L6O14933 153 aa7.27□□□□□ -1.25
LIG3-214ENST00000592244 NKX2-5P52952 324 aaPredicted RBP7.27□□□□□ -1.25
LIG3-214ENST00000592244 XGP55808 180 aa7.27□□□□□ -1.25
LIG3-214ENST00000592244 CT83Q5H943 113 aa7.27□□□□□ -1.25
LIG3-214ENST00000592244 PGLYRP4Q96LB8 373 aa7.27□□□□□ -1.25
LIG3-214ENST00000592244 DNAH5Q8TE73 4624 aa7.27□□□□□ -1.25
LIG3-214ENST00000592244 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.26□□□□□ -1.25
LIG3-214ENST00000592244 ZNF727A8MUV8 499 aa7.26□□□□□ -1.25
LIG3-214ENST00000592244 RBX1P62877 108 aa7.26□□□□□ -1.25
LIG3-214ENST00000592244 GAGE6Q13070 117 aa7.26□□□□□ -1.25
LIG3-214ENST00000592244 NTM-AS1Q6ZSK4 140 aa7.26□□□□□ -1.25
LIG3-214ENST00000592244 FAM210AQ96ND0 272 aa7.26□□□□□ -1.25
LIG3-214ENST00000592244 KRTAP4-5Q9BYR2 181 aa7.26□□□□□ -1.25
LIG3-214ENST00000592244 HSPG2P98160 4391 aa7.26□□□□□ -1.25
LIG3-214ENST00000592244 AMTP48728 403 aa7.25□□□□□ -1.25
LIG3-214ENST00000592244 FAM74A3Q4VXF1 159 aa7.25□□□□□ -1.25
LIG3-214ENST00000592244 ENHOQ6UWT2 76 aa7.25□□□□□ -1.25
LIG3-214ENST00000592244 TRAV8-4A0A0B4J246 113 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 A0A1B0GUV1 79 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 FAM231BA6NCW3 169 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 HLA-DQA1P01909 254 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 WFDC2Q14508 124 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 LINC01551Q86U37 167 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 LINC00269Q8N2A0 174 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 TSKUQ8WUA8 353 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 ANAPC16Q96DE5 110 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 GFRA4Q9GZZ7 299 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 PRR34Q9NV39 138 aa7.24□□□□□ -1.25
LIG3-214ENST00000592244 A0A1B0GUT8 65 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms