RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 DPH3P1Q9H4G8 78 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 DAZ3Q9NR90 486 aaKnown RBP7.36□□□□□ -1.23
CLIP3-203ENST00000586457 DNAH10Q8IVF4 4471 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 K7EN84 100 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 NDUFS6O75380 124 aaKnown RBP7.35□□□□□ -1.23
CLIP3-203ENST00000586457 LINC00694P0DN24 101 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 RAB14P61106 215 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 LAGE3Q14657 143 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 TMEM241Q24JQ0 296 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 FAM74A3Q4VXF1 159 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 NEXN-AS1Q8NBZ9 246 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 COX11Q9Y6N1 276 aa7.35□□□□□ -1.23
CLIP3-203ENST00000586457 TRBV6-8A0A0A6YYG3 113 aa7.34□□□□□ -1.23
CLIP3-203ENST00000586457 SRP19P09132 144 aaKnown RBP7.34□□□□□ -1.23
CLIP3-203ENST00000586457 RASL11AQ6T310 242 aa7.34□□□□□ -1.23
CLIP3-203ENST00000586457 FAM231DQ6ZW35 169 aa7.34□□□□□ -1.23
CLIP3-203ENST00000586457 PGLYRP4Q96LB8 373 aa7.34□□□□□ -1.23
CLIP3-203ENST00000586457 TRBV25-1A0A075B6N4 114 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 A0A087WTM6 91 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 CRPP02741 224 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 CTRLP40313 264 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 SUMO4Q6EEV6 95 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 Q6ZRN7 208 aaPredicted RBP7.33□□□□□ -1.24
CLIP3-203ENST00000586457 NIT1Q86X76 327 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 CHCHD7Q9BUK0 85 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 SMDT1Q9H4I9 107 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 NIT2Q9NQR4 276 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 KLK12Q9UKR0 248 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 KIF25-AS1Q9Y6Z4 181 aa7.33□□□□□ -1.24
CLIP3-203ENST00000586457 IGKV2D-24A0A075B6R9 120 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 M0QY20 66 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 UBE2L6O14933 153 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 Q0VG73 95 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 CT83Q5H943 113 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 CDPF1Q6NVV7 123 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 LINC01551Q86U37 167 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 UBE2WQ96B02 151 aa7.32□□□□□ -1.24
CLIP3-203ENST00000586457 IGHV1-24A0A0C4DH33 117 aa7.31□□□□□ -1.24
CLIP3-203ENST00000586457 ANGP03950 147 aaKnown RBP7.31□□□□□ -1.24
CLIP3-203ENST00000586457 KRTAP10-2P60368 255 aa7.31□□□□□ -1.24
CLIP3-203ENST00000586457 ADIRFQ15847 76 aa7.31□□□□□ -1.24
CLIP3-203ENST00000586457 TSKUQ8WUA8 353 aa7.31□□□□□ -1.24
CLIP3-203ENST00000586457 OSTCQ9NRP0 149 aa7.31□□□□□ -1.24
CLIP3-203ENST00000586457 NAT8Q9UHE5 227 aa7.31□□□□□ -1.24
CLIP3-203ENST00000586457 DNAH2Q9P225 4427 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 A0A1B0GUT8 65 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 RIGQ13278 110 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 COTL1Q14019 142 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 Q8N3U1 123 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 GTSF1Q8WW33 167 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 FRZBQ92765 325 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 GFRA4Q9GZZ7 299 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 HECTD4Q9Y4D8 3996 aa7.3□□□□□ -1.24
CLIP3-203ENST00000586457 IGLV5-52A0A0A0MRZ9 124 aa7.29□□□□□ -1.24
CLIP3-203ENST00000586457 FAM231BA6NCW3 169 aa7.29□□□□□ -1.24
CLIP3-203ENST00000586457 HIGD1CA8MV81 97 aa7.29□□□□□ -1.24
CLIP3-203ENST00000586457 GAGE6Q13070 117 aa7.29□□□□□ -1.24
CLIP3-203ENST00000586457 C1orf43Q9BWL3 253 aa7.29□□□□□ -1.24
CLIP3-203ENST00000586457 CNFNQ9BYD5 112 aa7.29□□□□□ -1.24
CLIP3-203ENST00000586457 BIRC6Q9NR09 4857 aa7.29□□□□□ -1.24
CLIP3-203ENST00000586457 CDK2AP2O75956 126 aa7.28□□□□□ -1.24
CLIP3-203ENST00000586457 GCSHP23434 173 aa7.28□□□□□ -1.24
CLIP3-203ENST00000586457 AMTP48728 403 aa7.28□□□□□ -1.24
CLIP3-203ENST00000586457 FOXA3P55318 350 aaPredicted RBP7.28□□□□□ -1.24
CLIP3-203ENST00000586457 ATRAIDQ6UW56 229 aa7.28□□□□□ -1.24
CLIP3-203ENST00000586457 NTN5Q8WTR8 489 aaPredicted RBP7.28□□□□□ -1.24
CLIP3-203ENST00000586457 TMEM243Q9BU79 118 aa7.28□□□□□ -1.24
CLIP3-203ENST00000586457 NAT8BQ9UHF3 227 aa7.28□□□□□ -1.24
CLIP3-203ENST00000586457 TRAV26-2A0A0B4J265 109 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 PMCHP20382 165 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 FUSP35637 526 aaKnown RBP eCLIP7.27□□□□□ -1.25
CLIP3-203ENST00000586457 RPL23P62829 140 aaKnown RBP7.27□□□□□ -1.25
CLIP3-203ENST00000586457 IQCJQ1A5X6 159 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 MPV17L2Q567V2 206 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 AMMECR1LQ6DCA0 310 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 Q8N814 137 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 Q8N976 141 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 GATD1Q8NB37 220 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 ISOC2Q96AB3 205 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 DNAH17Q9UFH2 4485 aa7.27□□□□□ -1.25
CLIP3-203ENST00000586457 LECT2O14960 151 aa7.26□□□□□ -1.25
CLIP3-203ENST00000586457 SRSF3P84103 164 aaKnown RBP7.26□□□□□ -1.25
CLIP3-203ENST00000586457 MIAQ16674 131 aa7.26□□□□□ -1.25
CLIP3-203ENST00000586457 NTM-AS1Q6ZSK4 140 aa7.26□□□□□ -1.25
CLIP3-203ENST00000586457 BAALCQ8WXS3 180 aa7.26□□□□□ -1.25
CLIP3-203ENST00000586457 ST20Q9HBF5 79 aa7.26□□□□□ -1.25
CLIP3-203ENST00000586457 PKD1P98161 4303 aa7.26□□□□□ -1.25
CLIP3-203ENST00000586457 LRCOL1A6NCL2 159 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 PPP1R17O96001 155 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 S100A8P05109 93 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 RBX1P62877 108 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 C14orf177Q52M58 125 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 LINC00269Q8N2A0 174 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 MAPKAPK5-AS1Q8N8E1 139 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 DEFB104AQ8WTQ1 72 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 TMEM191AQ9H0A3 160 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 V9GYV3 84 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 FAT2Q9NYQ8 4349 aa7.25□□□□□ -1.25
CLIP3-203ENST00000586457 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.24□□□□□ -1.25
CLIP3-203ENST00000586457 A0A1B0GW15 77 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms