RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NIT2Q9NQR4 276 aa11.33□□□□□ -0.6
SS18-211ENST00000578954 HHLA3Q9XRX5 114 aa11.33□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BKO60814 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BJP06899 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 P0DMU3 169 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 FAM231AP0DMU4 169 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 FAM231CP0DMU5 169 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 LINC00694P0DN24 101 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BOP23527 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BBP33778 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BDP58876 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BCP62807 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 RPL32P62910 135 aaKnown RBP11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST2H2BEQ16778 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 OR10J3Q5JRS4 329 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BHQ93079 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BNQ99877 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 HIST1H2BMQ99879 126 aa11.32□□□□□ -0.6
SS18-211ENST00000578954 F5H768 121 aa11.31□□□□□ -0.6
SS18-211ENST00000578954 C18orf32Q8TCD1 76 aa11.31□□□□□ -0.6
SS18-211ENST00000578954 VSIG2Q96IQ7 327 aa11.31□□□□□ -0.6
SS18-211ENST00000578954 PRADC1Q9BSG0 188 aa11.31□□□□□ -0.6
SS18-211ENST00000578954 Q9UF83 564 aa11.31□□□□□ -0.6
SS18-211ENST00000578954 TRAV10A0A0B4J240 114 aa11.3□□□□□ -0.6
SS18-211ENST00000578954 H3BNG1 76 aa11.3□□□□□ -0.6
SS18-211ENST00000578954 POLR2KP53803 58 aaKnown RBP11.3□□□□□ -0.6
SS18-211ENST00000578954 SUMO2P61956 95 aaKnown RBP11.3□□□□□ -0.6
SS18-211ENST00000578954 Q0VG73 95 aa11.3□□□□□ -0.6
SS18-211ENST00000578954 DEFB131BA0A096LNP1 70 aa11.29□□□□□ -0.6
SS18-211ENST00000578954 PAX4O43316 350 aa11.29□□□□□ -0.6
SS18-211ENST00000578954 HTN3P15516 51 aa11.29□□□□□ -0.6
SS18-211ENST00000578954 RAB5BP61020 215 aa11.29□□□□□ -0.6
SS18-211ENST00000578954 RPL36AP83881 106 aaKnown RBP11.29□□□□□ -0.6
SS18-211ENST00000578954 RPL36ALQ969Q0 106 aaKnown RBP11.29□□□□□ -0.6
SS18-211ENST00000578954 TMEM70Q9BUB7 260 aa11.29□□□□□ -0.6
SS18-211ENST00000578954 MAP1LC3AQ9H492 121 aa11.29□□□□□ -0.6
SS18-211ENST00000578954 ST20Q9HBF5 79 aa11.29□□□□□ -0.6
SS18-211ENST00000578954 IGLV2-18A0A075B6J9 118 aa11.28□□□□□ -0.6
SS18-211ENST00000578954 TRBV7-3A0A075B6L6 115 aa11.28□□□□□ -0.6
SS18-211ENST00000578954 TRAV26-1A0A087WT03 109 aa11.28□□□□□ -0.6
SS18-211ENST00000578954 TRBV27A0A0K0K1C4 114 aa11.28□□□□□ -0.6
SS18-211ENST00000578954 UBE2D3P61077 147 aa11.28□□□□□ -0.6
SS18-211ENST00000578954 UBE2D2P62837 147 aa11.28□□□□□ -0.6
SS18-211ENST00000578954 SMIM2Q9BVW6 85 aa11.28□□□□□ -0.6
SS18-211ENST00000578954 LOC100131303A0A0U1RQF7 123 aa11.27□□□□□ -0.61
SS18-211ENST00000578954 SDHAF1A6NFY7 115 aa11.27□□□□□ -0.61
SS18-211ENST00000578954 IQCJQ1A5X6 159 aa11.27□□□□□ -0.61
SS18-211ENST00000578954 TNFRSF18Q9Y5U5 241 aa11.27□□□□□ -0.61
SS18-211ENST00000578954 GYPEP15421 78 aa11.26□□□□□ -0.61
SS18-211ENST00000578954 COA6Q5JTJ3 125 aaKnown RBP11.26□□□□□ -0.61
SS18-211ENST00000578954 Q8N8P6 123 aa11.26□□□□□ -0.61
SS18-211ENST00000578954 ZNRF2Q8NHG8 242 aa11.26□□□□□ -0.61
SS18-211ENST00000578954 NXT2Q9NPJ8 142 aaKnown RBP11.26□□□□□ -0.61
SS18-211ENST00000578954 GAGE12JA6NER3 117 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 LINC01546A6NGU7 62 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 PMCHP20382 165 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 GAGE1Q13065 139 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 GAGE4Q13068 117 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 GAGE5Q13069 117 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 GAGE13Q4V321 117 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 PHLDA1Q8WV24 401 aaPredicted RBP11.25□□□□□ -0.61
SS18-211ENST00000578954 URB1-AS1Q96HZ7 61 aa11.25□□□□□ -0.61
SS18-211ENST00000578954 A0A0J9YY99 117 aa11.24□□□□□ -0.61
SS18-211ENST00000578954 VCYO14598 125 aa11.24□□□□□ -0.61
SS18-211ENST00000578954 LINC00310P59036 64 aa11.24□□□□□ -0.61
SS18-211ENST00000578954 DAZ4Q86SG3 579 aaKnown RBP11.24□□□□□ -0.61
SS18-211ENST00000578954 DAZ3Q9NR90 486 aaKnown RBP11.24□□□□□ -0.61
SS18-211ENST00000578954 LOC389332A0A1B0GUA5 103 aa11.23□□□□□ -0.61
SS18-211ENST00000578954 I3L3M4 83 aa11.23□□□□□ -0.61
SS18-211ENST00000578954 K7EMI3 77 aa11.23□□□□□ -0.61
SS18-211ENST00000578954 IFI27P40305 119 aaPredicted RBP11.23□□□□□ -0.61
SS18-211ENST00000578954 MRPL23Q16540 153 aaKnown RBP11.23□□□□□ -0.61
SS18-211ENST00000578954 ICOSQ9Y6W8 199 aa11.23□□□□□ -0.61
SS18-211ENST00000578954 A0A096LPF7 62 aa11.22□□□□□ -0.61
SS18-211ENST00000578954 NEGR1Q7Z3B1 354 aa11.22□□□□□ -0.61
SS18-211ENST00000578954 SH2D6Q7Z4S9 175 aa11.22□□□□□ -0.61
SS18-211ENST00000578954 NIT1Q86X76 327 aa11.22□□□□□ -0.61
SS18-211ENST00000578954 BAGE3Q86Y29 109 aa11.22□□□□□ -0.61
SS18-211ENST00000578954 PRSS3P2Q8NHM4 247 aa11.22□□□□□ -0.61
SS18-211ENST00000578954 CHCHD1Q96BP2 118 aaKnown RBP11.22□□□□□ -0.61
SS18-211ENST00000578954 DNAH7Q8WXX0 4024 aa11.21□□□□□ -0.61
SS18-211ENST00000578954 TCAPO15273 167 aa11.21□□□□□ -0.61
SS18-211ENST00000578954 TSHBP01222 138 aa11.21□□□□□ -0.61
SS18-211ENST00000578954 LINC00614P0C842 121 aa11.21□□□□□ -0.61
SS18-211ENST00000578954 ESDP10768 282 aa11.21□□□□□ -0.61
SS18-211ENST00000578954 C15orf53Q8NAA6 179 aa11.21□□□□□ -0.61
SS18-211ENST00000578954 ATP6V0E2Q8NHE4 81 aa11.21□□□□□ -0.61
SS18-211ENST00000578954 SERF1AO75920 110 aa11.2□□□□□ -0.62
SS18-211ENST00000578954 FA2HQ7L5A8 372 aa11.2□□□□□ -0.62
SS18-211ENST00000578954 KIR2DL4Q99706 377 aa11.2□□□□□ -0.62
SS18-211ENST00000578954 GTSF1LQ9H1H1 148 aa11.2□□□□□ -0.62
SS18-211ENST00000578954 AP5S1Q9NUS5 200 aa11.2□□□□□ -0.62
SS18-211ENST00000578954 DYNC2H1Q8NCM8 4307 aaKnown RBP11.19□□□□□ -0.62
SS18-211ENST00000578954 IGHV3-38A0A0C4DH36 116 aa11.19□□□□□ -0.62
SS18-211ENST00000578954 NDUFA6P56556 154 aa11.19□□□□□ -0.62
SS18-211ENST00000578954 TIRAPP58753 221 aa11.19□□□□□ -0.62
SS18-211ENST00000578954 COTL1Q14019 142 aa11.19□□□□□ -0.62
SS18-211ENST00000578954 TMEM97Q5BJF2 176 aa11.19□□□□□ -0.62
SS18-211ENST00000578954 CEMP1Q6PRD7 247 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 278.6 ms