RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 VMO1Q7Z5L0 202 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 LHFPL1Q86WI0 220 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 PRR15Q8IV56 129 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 IFT20Q8IY31 132 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 OR5A1Q8NGJ0 315 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 OR2T10Q8NGZ9 312 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 CANT1Q8WVQ1 401 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 MRPL32Q9BYC8 188 aaKnown RBP3.31□□□□□ -1.88
VPS53-219ENST00000576019 POPDC3Q9HBV1 291 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 FCGBPQ9Y6R7 5405 aaPredicted RBP3.31□□□□□ -1.88
VPS53-219ENST00000576019 GNRH2O43555 120 aa3.3□□□□□ -1.88
VPS53-219ENST00000576019 RNASE4P34096 147 aaKnown RBP3.3□□□□□ -1.88
VPS53-219ENST00000576019 EIF4EBP1Q13541 118 aaPredicted RBP3.3□□□□□ -1.88
VPS53-219ENST00000576019 TMEM203Q969S6 136 aa3.3□□□□□ -1.88
VPS53-219ENST00000576019 HIST1H2BLQ99880 126 aa3.3□□□□□ -1.88
VPS53-219ENST00000576019 TCEAL7Q9BRU2 100 aa3.3□□□□□ -1.88
VPS53-219ENST00000576019 TIMM9Q9Y5J7 89 aa3.3□□□□□ -1.88
VPS53-219ENST00000576019 HSPE1-MOB4S4R3N1 261 aa3.3□□□□□ -1.88
VPS53-219ENST00000576019 IGLV2-18A0A075B6J9 118 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 A0A1B0GW64 132 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 OR51F1A6NGY5 319 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 FAM25AB3EWG3 89 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 FAM25CB3EWG5 89 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 FAM25GB3EWG6 89 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 C9JAW5 83 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 TPST1O60507 370 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 CPSF4O95639 269 aaKnown RBP3.29□□□□□ -1.88
VPS53-219ENST00000576019 NAPSAO96009 420 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 UCHL1P09936 223 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 UBBP0CG47 229 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 PSG9Q00887 426 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 EMX2Q04743 252 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 DEFB136Q30KP8 78 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 HMGN2P46Q86SG4 172 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 OR8I2Q8N0Y5 310 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 PFN4Q8NHR9 129 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 TMEM106AQ96A25 262 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 HIGD1AQ9Y241 93 aa3.29□□□□□ -1.88
VPS53-219ENST00000576019 TRAV7A0A075B6U4 112 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 CCDC160A6NGH7 325 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 SYNGR2O43760 224 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 GGCTO75223 188 aaKnown RBP3.28□□□□□ -1.88
VPS53-219ENST00000576019 MPC1LP0DKB6 136 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 RPL22P35268 128 aaKnown RBP3.28□□□□□ -1.88
VPS53-219ENST00000576019 DYNLT3P51808 116 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 C10orf126Q8N4M7 172 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 Q8NDZ9 215 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 C14orf144Q96I85 54 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 HIGD2AQ9BW72 106 aa3.28□□□□□ -1.88
VPS53-219ENST00000576019 MRPL16Q9NX20 251 aaKnown RBP3.28□□□□□ -1.88
VPS53-219ENST00000576019 A0A096LPI6 279 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 PGLYRP1O75594 196 aaPredicted RBP3.27□□□□□ -1.89
VPS53-219ENST00000576019 CST7O76096 145 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 IFNA4P05014 189 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 P0DMU3 169 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 FAM231AP0DMU4 169 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 FAM231CP0DMU5 169 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 FABP2P12104 132 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 GNG2P59768 71 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 HIST1H1AQ02539 215 aaPredicted RBP3.27□□□□□ -1.89
VPS53-219ENST00000576019 KHDC3LQ587J8 217 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 HAGHLQ6PII5 290 aaPredicted RBP3.27□□□□□ -1.89
VPS53-219ENST00000576019 DPPA3Q6W0C5 159 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 YPEL2Q96QA6 119 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 ADAT1Q9BUB4 502 aaKnown RBP3.27□□□□□ -1.89
VPS53-219ENST00000576019 NPCDR1Q9BY65 106 aa3.27□□□□□ -1.89
VPS53-219ENST00000576019 A0A0J9YX75 114 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 ARRDC5A6NEK1 342 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 A8MU10 97 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 H7C2G1 150 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 ZNF25P17030 456 aaPredicted RBP3.26□□□□□ -1.89
VPS53-219ENST00000576019 SDC2P34741 201 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 RRAS2P62070 204 aaPredicted RBP3.26□□□□□ -1.89
VPS53-219ENST00000576019 PRB3Q04118 309 aaPredicted RBP3.26□□□□□ -1.89
VPS53-219ENST00000576019 KLRD1Q13241 179 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 RNASE10Q5GAN6 216 aaKnown RBP3.26□□□□□ -1.89
VPS53-219ENST00000576019 LYZL1Q6UWQ5 148 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 SLC35E3Q7Z769 313 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 DYNAPQ8N1N2 210 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 PRADC1Q9BSG0 188 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 U3KQ87 197 aa3.26□□□□□ -1.89
VPS53-219ENST00000576019 IGKV2-28A0A075B6P5 120 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 TRAV5A0A0B4J249 113 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 J3QQQ9 107 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 K7ERJ3 54 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 NDUFB3O43676 98 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 OR2H2O95918 312 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 IGKV2D-28P01615 120 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 S100A8P05109 93 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 CRYGAP11844 174 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 HRES1P13985 223 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 HBBP68871 147 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 HAMPP81172 84 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 VMA21Q3ZAQ7 101 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 PYDC2Q56P42 97 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 SOSTDC1Q6X4U4 206 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 TCTE3Q8IZS6 198 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 SMIM3Q9BZL3 60 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 CALML5Q9NZT1 146 aa3.25□□□□□ -1.89
VPS53-219ENST00000576019 EPDR1Q9UM22 224 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms