RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 NPVFQ9HCQ7 196 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 UQCR10Q9UDW1 63 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 PYGO1Q9Y3Y4 419 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 TMEM250H0YL14 139 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 NDUFC2O95298 119 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 IGHV3-11P01762 117 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 TRGV3P03979 118 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 CHTF8P0CG12 524 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 C18orf65Q6ZTR6 163 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 ATP5L2Q7Z4Y8 100 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 ZNF580Q9UK33 172 aa4.97□□□□□ -1.61
VPS53-217ENST00000575100 IGHV3-35A0A0C4DH35 117 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 OR2T8A6NH00 312 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 KNCNA6PVL3 124 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 IGKV1-17P01599 117 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 COA6Q5JTJ3 125 aaKnown RBP4.96□□□□□ -1.61
VPS53-217ENST00000575100 KPRPQ5T749 579 aaPredicted RBP4.96□□□□□ -1.61
VPS53-217ENST00000575100 MIC13Q5XKP0 118 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 TMEM75Q8N9X5 138 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 C16orf95Q9H693 158 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 PXMP4Q9Y6I8 212 aa4.96□□□□□ -1.61
VPS53-217ENST00000575100 CTSGP08311 255 aa4.96□□□□□ -1.62
VPS53-217ENST00000575100 LINC00869P0C866 280 aa4.96□□□□□ -1.62
VPS53-217ENST00000575100 RPS10P46783 165 aaKnown RBP4.96□□□□□ -1.62
VPS53-217ENST00000575100 C21orf62Q9NYP8 219 aa4.96□□□□□ -1.62
VPS53-217ENST00000575100 IGHV3OR16-8A0A075B7F1 116 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 TCRBV4S1A1TA0A5B7 111 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 ZFP92A6NM28 416 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 TAX1BP3O14907 124 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 SEC11BP0C7V7 166 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 MP68P56378 58 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 Q56UQ5 140 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 ADAMTSL4-AS1Q5T5F5 129 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 RPP25LQ8N5L8 163 aaKnown RBP4.95□□□□□ -1.62
VPS53-217ENST00000575100 SCGB1C1Q8TD33 95 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 MYOZ3Q8TDC0 251 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 TMEM70Q9BUB7 260 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 ZNF331Q9NQX6 463 aaPredicted RBP4.95□□□□□ -1.62
VPS53-217ENST00000575100 RPRMQ9NS64 109 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 TRAV5A0A0B4J249 113 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 FAM223BA6NKX1 122 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 H3BUA1 57 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 ATP5G2Q06055 141 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 PATE2Q6UY27 113 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 CYP2G1PQ6ZSU1 146 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 FAM223AQ8IWN6 122 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 ANKRD29Q8N6D5 301 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 GNPNAT1Q96EK6 184 aaPredicted RBP4.95□□□□□ -1.62
VPS53-217ENST00000575100 SLC25A22Q9H936 323 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 RPS10P5Q9NQ39 176 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 MDFICQ9P1T7 246 aa4.95□□□□□ -1.62
VPS53-217ENST00000575100 KRTAP4-16G5E9R7 235 aaPredicted RBP4.94□□□□□ -1.62
VPS53-217ENST00000575100 PEX7O00628 323 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 OVOL1O14753 267 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 CD28P10747 220 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 DEFB136Q30KP8 78 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 LCE1DQ5T752 114 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 AP1S3Q96PC3 154 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 TRGV9Q99603 122 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 SLC25A2Q9BXI2 301 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 MRPL32Q9BYC8 188 aaKnown RBP4.94□□□□□ -1.62
VPS53-217ENST00000575100 EIF5A2Q9GZV4 153 aaKnown RBP4.94□□□□□ -1.62
VPS53-217ENST00000575100 SLC39A9Q9NUM3 307 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 TIMM9Q9Y5J7 89 aa4.94□□□□□ -1.62
VPS53-217ENST00000575100 TRBV7-1A0A0A6YYK4 115 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 GGTLC3B5MD39 225 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 BMPR1BO00238 502 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 DUSP14O95147 198 aaKnown RBP4.93□□□□□ -1.62
VPS53-217ENST00000575100 RPL23P62829 140 aaKnown RBP4.93□□□□□ -1.62
VPS53-217ENST00000575100 CASC10Q5T4H9 136 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 UNQ9165/PRO28630Q6UXU0 137 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 ZNF709Q8N972 641 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 OR4X2Q8NGF9 303 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 Q9H3A6 140 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 TRAV8-1A0A0A6YYK1 113 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 C17orf112F2Z3M2 114 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 J3QQQ9 107 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 PSMB3P49720 205 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 SERF2P84101 59 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 Q6AWC8 147 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 OR4B1Q8NGF8 309 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 FAM213BQ8TBF2 198 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 FAM104AQ969W3 186 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 USMG5Q96IX5 58 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 C18orf15Q96N68 181 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 KCNIP2Q9NS61 270 aa4.93□□□□□ -1.62
VPS53-217ENST00000575100 C7orf77A4D0Y5 90 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 IL4P05112 153 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 TRGC1P0CF51 173 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 IFITM1P13164 125 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 LYZP61626 148 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 CCL20P78556 96 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 Q6Q795 121 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 LCN15Q6UWW0 184 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 MIR17HGQ75NE6 70 aa4.92□□□□□ -1.62
VPS53-217ENST00000575100 ZNF705FA8MVS1 300 aaPredicted RBP4.91□□□□□ -1.62
VPS53-217ENST00000575100 COX7A2P2O60397 106 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 ZNF705DP0CH99 300 aaPredicted RBP4.91□□□□□ -1.62
VPS53-217ENST00000575100 ZNF705BP0CI00 300 aaPredicted RBP4.91□□□□□ -1.62
VPS53-217ENST00000575100 HINT1P49773 126 aaPredicted RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms