RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 SPG11Q96JI7 2443 aa11.57□□□□□ -0.56
NUP88-207ENST00000573584 LEPROTO15243 131 aa11.57□□□□□ -0.56
NUP88-207ENST00000573584 TGFAP01135 160 aa11.57□□□□□ -0.56
NUP88-207ENST00000573584 C20orf203Q8NBC4 194 aa11.57□□□□□ -0.56
NUP88-207ENST00000573584 IGHV3-64A0A075B6Q5 118 aa11.56□□□□□ -0.56
NUP88-207ENST00000573584 K7EQG2 157 aa11.56□□□□□ -0.56
NUP88-207ENST00000573584 I3L3M4 83 aa11.56□□□□□ -0.56
NUP88-207ENST00000573584 CDIP1Q9H305 208 aa11.56□□□□□ -0.56
NUP88-207ENST00000573584 A4D1N5 150 aa11.56□□□□□ -0.56
NUP88-207ENST00000573584 TEN1Q86WV5 123 aa11.56□□□□□ -0.56
NUP88-207ENST00000573584 ZNF580Q9UK33 172 aa11.56□□□□□ -0.56
NUP88-207ENST00000573584 A0A1B0GV72 72 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 PPDPFLQ8WWR9 84 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 RAX2Q96IS3 184 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 VCX2Q9H322 139 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 A0A0J9YXV3 536 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 A8MWV9 139 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 RHODO00212 210 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 IGHV4-59P01825 116 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 ZNF22P17026 224 aaPredicted RBP11.55□□□□□ -0.56
NUP88-207ENST00000573584 CARD19Q96LW7 228 aa11.55□□□□□ -0.56
NUP88-207ENST00000573584 TRAV2A0A0B4J234 112 aa11.54□□□□□ -0.56
NUP88-207ENST00000573584 SYNJ2BPP57105 145 aa11.54□□□□□ -0.56
NUP88-207ENST00000573584 CSPG4Q6UVK1 2322 aa11.54□□□□□ -0.56
NUP88-207ENST00000573584 B4DSR2 109 aa11.53□□□□□ -0.56
NUP88-207ENST00000573584 IGLV4-3A0A075B6K6 122 aa11.53□□□□□ -0.56
NUP88-207ENST00000573584 SBSPONQ8IVN8 264 aa11.53□□□□□ -0.56
NUP88-207ENST00000573584 FHL3Q13643 280 aa11.53□□□□□ -0.56
NUP88-207ENST00000573584 MUSTN1Q8IVN3 82 aa11.53□□□□□ -0.56
NUP88-207ENST00000573584 DEFB112Q30KQ8 113 aa11.52□□□□□ -0.57
NUP88-207ENST00000573584 H7C2G1 150 aa11.52□□□□□ -0.57
NUP88-207ENST00000573584 HTN1P15515 57 aa11.52□□□□□ -0.57
NUP88-207ENST00000573584 DUX5Q96PT3 197 aa11.52□□□□□ -0.57
NUP88-207ENST00000573584 SORL1Q92673 2214 aa11.51□□□□□ -0.57
NUP88-207ENST00000573584 TRGV11A0A075B6L2 103 aa11.51□□□□□ -0.57
NUP88-207ENST00000573584 EIF4EBP3O60516 100 aaPredicted RBP11.51□□□□□ -0.57
NUP88-207ENST00000573584 IGHV3-33P01772 117 aa11.51□□□□□ -0.57
NUP88-207ENST00000573584 TMEM263Q8WUH6 116 aaKnown RBP11.51□□□□□ -0.57
NUP88-207ENST00000573584 ERG28Q9UKR5 140 aa11.51□□□□□ -0.57
NUP88-207ENST00000573584 SPINK8P0C7L1 97 aa11.51□□□□□ -0.57
NUP88-207ENST00000573584 IGHV3-73A0A0B4J1V6 119 aa11.5□□□□□ -0.57
NUP88-207ENST00000573584 CKS1BP61024 79 aa11.5□□□□□ -0.57
NUP88-207ENST00000573584 TCTEX1D4Q5JR98 221 aa11.5□□□□□ -0.57
NUP88-207ENST00000573584 SPXQ9BT56 116 aa11.5□□□□□ -0.57
NUP88-207ENST00000573584 PRORYQ9H606 182 aa11.5□□□□□ -0.57
NUP88-207ENST00000573584 ANKRD29Q8N6D5 301 aa11.5□□□□□ -0.57
NUP88-207ENST00000573584 MT-ATP8P03928 68 aa11.49□□□□□ -0.57
NUP88-207ENST00000573584 CRYBA4P53673 196 aa11.49□□□□□ -0.57
NUP88-207ENST00000573584 A0A0B4J2C4 111 aa11.49□□□□□ -0.57
NUP88-207ENST00000573584 TMEM89A2RUT3 159 aa11.49□□□□□ -0.57
NUP88-207ENST00000573584 CD28P10747 220 aa11.49□□□□□ -0.57
NUP88-207ENST00000573584 XGP55808 180 aa11.49□□□□□ -0.57
NUP88-207ENST00000573584 Q6ZUT4 128 aa11.49□□□□□ -0.57
NUP88-207ENST00000573584 A0A0J9YXY3 114 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 C9JAW5 83 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 SLC25A20O43772 301 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 IGHV3-30-3P0DP02 117 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.48□□□□□ -0.57
NUP88-207ENST00000573584 ADARB2-AS1A8MUL3 147 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 M0R2P5 195 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 RBMY1A1P0DJD3 496 aaKnown RBP11.48□□□□□ -0.57
NUP88-207ENST00000573584 RBMY1CP0DJD4 496 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 PROK1P58294 105 aa11.48□□□□□ -0.57
NUP88-207ENST00000573584 RBMY1FQ15415 496 aaKnown RBP11.48□□□□□ -0.57
NUP88-207ENST00000573584 CREBBPQ92793 2442 aa11.47□□□□□ -0.57
NUP88-207ENST00000573584 GATA3P23771 443 aa11.47□□□□□ -0.57
NUP88-207ENST00000573584 HOXD3P31249 432 aaPredicted RBP11.47□□□□□ -0.57
NUP88-207ENST00000573584 Q1RN00 199 aa11.47□□□□□ -0.57
NUP88-207ENST00000573584 CEMP1Q6PRD7 247 aaPredicted RBP11.47□□□□□ -0.57
NUP88-207ENST00000573584 TIMM21Q9BVV7 248 aa11.47□□□□□ -0.57
NUP88-207ENST00000573584 PYGO1Q9Y3Y4 419 aa11.47□□□□□ -0.57
NUP88-207ENST00000573584 DOPEY2Q9Y3R5 2298 aa11.47□□□□□ -0.57
NUP88-207ENST00000573584 RNF152Q8N8N0 203 aa11.46□□□□□ -0.57
NUP88-207ENST00000573584 FAM104AQ969W3 186 aa11.46□□□□□ -0.57
NUP88-207ENST00000573584 KNCNA6PVL3 124 aa11.46□□□□□ -0.57
NUP88-207ENST00000573584 TNFRSF18Q9Y5U5 241 aa11.46□□□□□ -0.57
NUP88-207ENST00000573584 MRPS36P82909 103 aaKnown RBP11.46□□□□□ -0.58
NUP88-207ENST00000573584 TRAV8-3A0A0A6YYJ7 113 aa11.45□□□□□ -0.58
NUP88-207ENST00000573584 PRSS2P07478 247 aa11.45□□□□□ -0.58
NUP88-207ENST00000573584 RNASE13Q5GAN3 156 aaKnown RBP11.45□□□□□ -0.58
NUP88-207ENST00000573584 PRM2P04554 102 aa11.45□□□□□ -0.58
NUP88-207ENST00000573584 NRGNQ92686 78 aa11.44□□□□□ -0.58
NUP88-207ENST00000573584 EDA2RQ9HAV5 297 aa11.44□□□□□ -0.58
NUP88-207ENST00000573584 ELANEP08246 267 aa11.44□□□□□ -0.58
NUP88-207ENST00000573584 DEFB131AP59861 70 aa11.43□□□□□ -0.58
NUP88-207ENST00000573584 Q9UF83 564 aa11.43□□□□□ -0.58
NUP88-207ENST00000573584 CSMD2Q7Z408 3487 aa11.43□□□□□ -0.58
NUP88-207ENST00000573584 LITAFQ99732 161 aa11.43□□□□□ -0.58
NUP88-207ENST00000573584 GEMIN7Q9H840 131 aaKnown RBP11.43□□□□□ -0.58
NUP88-207ENST00000573584 BEX4Q9NWD9 120 aaPredicted RBP11.43□□□□□ -0.58
NUP88-207ENST00000573584 IGHV1-58A0A0C4DH39 117 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 TMEM262E9PQX1 116 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 M0QXV9 152 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 ATXN8Q156A1 80 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 LINC01356Q8N9X3 169 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 UBE2E2Q96LR5 201 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 DUX3Q96PT4 197 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 CFAP46Q8IYW2 2715 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 FLNCQ14315 2725 aa11.42□□□□□ -0.58
NUP88-207ENST00000573584 NDUFA12Q9UI09 145 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 315.1 ms