RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 IGHV3-66A0A0C4DH42 116 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 B4DEV8 164 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 M0R381 172 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 IFNA7P01567 189 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 LYZP61626 148 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 OR8I2Q8N0Y5 310 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 ZNF664Q8N3J9 261 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 CAMK2N2Q96S95 79 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 KCNIP2Q9NS61 270 aa4.23□□□□□ -1.73
VPS53-212ENST00000572259 ZNF706Q9Y5V0 76 aaPredicted RBP4.23□□□□□ -1.73
VPS53-212ENST00000572259 TENM3Q9P273 2699 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 C7orf66A4D0T2 115 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 EPM2AB3EWF7 344 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 C3orf84H3BNL1 204 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 METTL15P1P0C7V9 234 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 CRISP2P16562 243 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 RPL7P18124 248 aaKnown RBP4.22□□□□□ -1.73
VPS53-212ENST00000572259 S100A11P31949 105 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 S100A10P60903 97 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 PSG9Q00887 426 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 ZNF90Q03938 601 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 EBLN2Q6P2I7 272 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 TMEM14EPQ6UXP3 125 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 LINC00322Q6ZN03 302 aaPredicted RBP4.22□□□□□ -1.73
VPS53-212ENST00000572259 CYP2G1PQ6ZSU1 146 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 SLC25A29Q8N8R3 303 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 GNPNAT1Q96EK6 184 aaPredicted RBP4.22□□□□□ -1.73
VPS53-212ENST00000572259 ZNF414Q96IQ9 312 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 OPRPNQ99935 248 aaPredicted RBP4.22□□□□□ -1.73
VPS53-212ENST00000572259 NMES1Q9C002 83 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 MDFICQ9P1T7 246 aa4.22□□□□□ -1.73
VPS53-212ENST00000572259 HUWE1Q7Z6Z7 4374 aaKnown RBP4.21□□□□□ -1.74
VPS53-212ENST00000572259 IGKV1D-37A0A075B6S9 117 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 TRAV4A0A0B4J268 109 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 HYPMO75409 117 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 SMIM6P0DI80 62 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 ATP5G3P48201 142 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 LINC00313P59037 77 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 DEFB131AP59861 70 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 RRAS2P62070 204 aaPredicted RBP4.21□□□□□ -1.74
VPS53-212ENST00000572259 MORN3Q6PF18 240 aaPredicted RBP4.21□□□□□ -1.74
VPS53-212ENST00000572259 Q6Q795 121 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 EXOC3-AS1Q8N2X6 119 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 GTSF1Q8WW33 167 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 LINC00479Q96M42 142 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 WFDC10AQ9H1F0 79 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 HIGD1AQ9Y241 93 aa4.21□□□□□ -1.74
VPS53-212ENST00000572259 IGKV1OR2-108A0A075B7D4 117 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 KRTAP16-1A8MUX0 517 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 K7ERU9 68 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 CST7O76096 145 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 LTAP01374 205 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 ZNF688P0C7X2 276 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 LINC00869P0C866 280 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 SLC38A11Q08AI6 406 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 TMEM183BQ1AE95 376 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 TMEM241Q24JQ0 296 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 MPV17L2Q567V2 206 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 TMEM183AQ8IXX5 376 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 MUC7Q8TAX7 377 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 DCANP1Q8TF63 244 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 PHYHIPLQ96FC7 376 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 LAMTOR2Q9Y2Q5 125 aa4.2□□□□□ -1.74
VPS53-212ENST00000572259 FAM24AA6NFZ4 105 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 OR7C2O60412 319 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 EVI2AP22794 236 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 DEFB135Q30KP9 77 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 PSMG4Q5JS54 123 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 ZNF709Q8N972 641 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 IGF2BP2-AS1Q96M15 143 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 LINC00052Q96N35 136 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 CHAC1Q9BUX1 264 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 IMUPQ9GZP8 106 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 RPRMQ9NS64 109 aa4.19□□□□□ -1.74
VPS53-212ENST00000572259 IGLV1-50A0A075B6I6 118 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 C17orf112F2Z3M2 114 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 SIX6O95475 246 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 ZNF25P17030 456 aaPredicted RBP4.18□□□□□ -1.74
VPS53-212ENST00000572259 FGF7P21781 194 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 ZC2HC1BQ5TFG8 222 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 C10orf113Q5VZT2 155 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 FOXI2Q6ZQN5 318 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 LINC00305Q7Z4B0 112 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 BPIFA4PQ86YQ2 179 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 Q8N377 158 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 OR8A1Q8NGG7 326 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 PPP1R1CQ8WVI7 109 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 SHANK2-AS3Q9BTD1 123 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 SND1-IT1Q9HBX3 110 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 ZNF492Q9P255 531 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 CYSLTR1Q9Y271 337 aa4.18□□□□□ -1.74
VPS53-212ENST00000572259 UBE2L5PA0A1B0GUS4 154 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 NDUFAF8A1L188 74 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 H3BRN7 92 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 MPC2O95563 127 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 SMIM17P0DL12 118 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 SRIP30626 198 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 CXCL5P42830 114 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 C14orf177Q52M58 125 aa4.17□□□□□ -1.74
VPS53-212ENST00000572259 BAP18Q8IXM2 172 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms