RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 AP5S1Q9NUS5 200 aa12.52□□□□□ -0.41
CCDC40-206ENST00000572083 TNFSF18Q9UNG2 199 aa12.52□□□□□ -0.41
CCDC40-206ENST00000572083 TRBV25-1A0A075B6N4 114 aa12.51□□□□□ -0.41
CCDC40-206ENST00000572083 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-206ENST00000572083 FAM74A7A6NL05 159 aa12.51□□□□□ -0.41
CCDC40-206ENST00000572083 UBE2G1P62253 170 aa12.51□□□□□ -0.41
CCDC40-206ENST00000572083 IFITM3Q01628 133 aa12.51□□□□□ -0.41
CCDC40-206ENST00000572083 FMC1Q96HJ9 113 aa12.51□□□□□ -0.41
CCDC40-206ENST00000572083 PLAC8Q9NZF1 115 aa12.51□□□□□ -0.41
CCDC40-206ENST00000572083 TRBV6-1A0A0K0K1D8 114 aa12.5□□□□□ -0.41
CCDC40-206ENST00000572083 F5H697 171 aa12.5□□□□□ -0.41
CCDC40-206ENST00000572083 DEFA3P59666 94 aa12.5□□□□□ -0.41
CCDC40-206ENST00000572083 TMEM97Q5BJF2 176 aa12.5□□□□□ -0.41
CCDC40-206ENST00000572083 S100ZQ8WXG8 99 aa12.5□□□□□ -0.41
CCDC40-206ENST00000572083 VAX2Q9UIW0 290 aa12.5□□□□□ -0.41
CCDC40-206ENST00000572083 MUC21A0A0G2JKD1 596 aa12.49□□□□□ -0.41
CCDC40-206ENST00000572083 MUC21A0A140T8X8 626 aa12.49□□□□□ -0.41
CCDC40-206ENST00000572083 RAB5CP51148 216 aa12.49□□□□□ -0.41
CCDC40-206ENST00000572083 LPAP08519 4548 aa12.49□□□□□ -0.41
CCDC40-206ENST00000572083 CTXND1A0A1B0GTU2 59 aa12.48□□□□□ -0.41
CCDC40-206ENST00000572083 GAS8-AS1O95177 125 aa12.48□□□□□ -0.41
CCDC40-206ENST00000572083 PRR3P79522 188 aaKnown RBP12.48□□□□□ -0.41
CCDC40-206ENST00000572083 GTSF1Q8WW33 167 aa12.48□□□□□ -0.41
CCDC40-206ENST00000572083 LTAP01374 205 aa12.47□□□□□ -0.41
CCDC40-206ENST00000572083 SSTP61278 116 aa12.47□□□□□ -0.41
CCDC40-206ENST00000572083 WDR73Q6P4I2 378 aa12.47□□□□□ -0.41
CCDC40-206ENST00000572083 C20orf203Q8NBC4 194 aa12.47□□□□□ -0.41
CCDC40-206ENST00000572083 AQP10Q96PS8 301 aa12.47□□□□□ -0.41
CCDC40-206ENST00000572083 ZNF471Q9BX82 626 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-206ENST00000572083 NKX6-2Q9C056 277 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-206ENST00000572083 A0A0J9YXV3 536 aa12.46□□□□□ -0.41
CCDC40-206ENST00000572083 IQCJQ1A5X6 159 aa12.46□□□□□ -0.41
CCDC40-206ENST00000572083 GFRA4Q9GZZ7 299 aa12.46□□□□□ -0.41
CCDC40-206ENST00000572083 TRAV8-4A0A0B4J246 113 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 IGHV1-24A0A0C4DH33 117 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 A6NHS1 94 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 P01737 135 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 COX6A2Q02221 97 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 SPANXN1Q5VSR9 72 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 LINC00299Q6ZSB3 139 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 NDUFA13Q9P0J0 144 aa12.45□□□□□ -0.42
CCDC40-206ENST00000572083 IGLV4-60A0A075B6I1 120 aa12.44□□□□□ -0.42
CCDC40-206ENST00000572083 IGKV2-24A0A0C4DH68 120 aa12.44□□□□□ -0.42
CCDC40-206ENST00000572083 MAJINQ3KP22 176 aa12.44□□□□□ -0.42
CCDC40-206ENST00000572083 SNAI2O43623 268 aa12.43□□□□□ -0.42
CCDC40-206ENST00000572083 KRTAP10-8P60410 259 aa12.43□□□□□ -0.42
CCDC40-206ENST00000572083 RPL7L1Q6DKI1 246 aaKnown RBP12.43□□□□□ -0.42
CCDC40-206ENST00000572083 LYPD6BQ8NI32 183 aa12.43□□□□□ -0.42
CCDC40-206ENST00000572083 SMIM17P0DL12 118 aa12.42□□□□□ -0.42
CCDC40-206ENST00000572083 AKR1C3P42330 323 aa12.42□□□□□ -0.42
CCDC40-206ENST00000572083 C15orf56Q8N910 161 aa12.42□□□□□ -0.42
CCDC40-206ENST00000572083 STPG4Q8N801 248 aa12.41□□□□□ -0.42
CCDC40-206ENST00000572083 PRSS3P2Q8NHM4 247 aa12.41□□□□□ -0.42
CCDC40-206ENST00000572083 NDUFS6O75380 124 aaKnown RBP12.4□□□□□ -0.42
CCDC40-206ENST00000572083 CXCL1P09341 107 aa12.4□□□□□ -0.42
CCDC40-206ENST00000572083 GZMBP10144 247 aa12.4□□□□□ -0.42
CCDC40-206ENST00000572083 CST9LP1Q5W188 147 aa12.4□□□□□ -0.42
CCDC40-206ENST00000572083 AP1S3Q96PC3 154 aa12.4□□□□□ -0.42
CCDC40-206ENST00000572083 SSBP4Q9BWG4 385 aaPredicted RBP12.4□□□□□ -0.42
CCDC40-206ENST00000572083 MAP1LC3B2A6NCE7 125 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 MGPP08493 103 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 OR5AL1P0C617 328 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 HIGD2BQ4VC39 106 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 REG3GQ6UW15 175 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 STOML3Q8TAV4 291 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 TMEM243Q9BU79 118 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 MAP1LC3BQ9GZQ8 125 aa12.39□□□□□ -0.43
CCDC40-206ENST00000572083 A0A1B0GUV1 79 aa12.38□□□□□ -0.43
CCDC40-206ENST00000572083 RPS10P46783 165 aaKnown RBP12.38□□□□□ -0.43
CCDC40-206ENST00000572083 AKR1C8PQ5T2L2 129 aa12.38□□□□□ -0.43
CCDC40-206ENST00000572083 TCEAL7Q9BRU2 100 aa12.38□□□□□ -0.43
CCDC40-206ENST00000572083 GAGE12HA6NDE8 117 aa12.37□□□□□ -0.43
CCDC40-206ENST00000572083 M0QY20 66 aa12.37□□□□□ -0.43
CCDC40-206ENST00000572083 SULT1A2P50226 295 aa12.37□□□□□ -0.43
CCDC40-206ENST00000572083 Q5BKY6 102 aa12.37□□□□□ -0.43
CCDC40-206ENST00000572083 SPINK6Q6UWN8 80 aa12.37□□□□□ -0.43
CCDC40-206ENST00000572083 INO80EQ8NBZ0 244 aaPredicted RBP12.37□□□□□ -0.43
CCDC40-206ENST00000572083 ALG5Q9Y673 324 aa12.37□□□□□ -0.43
CCDC40-206ENST00000572083 A0A096LNI7 61 aa12.36□□□□□ -0.43
CCDC40-206ENST00000572083 BORCS7-ASMTA0A0B4J1R7 106 aa12.36□□□□□ -0.43
CCDC40-206ENST00000572083 FHITP49789 147 aa12.36□□□□□ -0.43
CCDC40-206ENST00000572083 NKX2-5P52952 324 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-206ENST00000572083 IGKV3OR2-268A0A0C4DH90 116 aa12.35□□□□□ -0.43
CCDC40-206ENST00000572083 DEFA1P59665 94 aa12.35□□□□□ -0.43
CCDC40-206ENST00000572083 SUMO4Q6EEV6 95 aa12.35□□□□□ -0.43
CCDC40-206ENST00000572083 UBE2L6O14933 153 aa12.34□□□□□ -0.43
CCDC40-206ENST00000572083 CFAP161Q6P656 301 aa12.34□□□□□ -0.43
CCDC40-206ENST00000572083 MLST8Q9BVC4 326 aa12.34□□□□□ -0.43
CCDC40-206ENST00000572083 SCO2A0A1W2PP80 73 aa12.33□□□□□ -0.44
CCDC40-206ENST00000572083 H7C1H1 209 aa12.33□□□□□ -0.44
CCDC40-206ENST00000572083 PAGE4O60829 102 aa12.32□□□□□ -0.44
CCDC40-206ENST00000572083 BAGE2Q86Y30 109 aa12.32□□□□□ -0.44
CCDC40-206ENST00000572083 TPPP3Q9BW30 176 aa12.32□□□□□ -0.44
CCDC40-206ENST00000572083 FXYD6-FXYD2A0A087WZ82 144 aa12.31□□□□□ -0.44
CCDC40-206ENST00000572083 AMTP48728 403 aa12.3□□□□□ -0.44
CCDC40-206ENST00000572083 SRSF9Q13242 221 aaKnown RBP eCLIP12.3□□□□□ -0.44
CCDC40-206ENST00000572083 PGLYRP4Q96LB8 373 aa12.3□□□□□ -0.44
CCDC40-206ENST00000572083 S100A9P06702 114 aaKnown RBP12.29□□□□□ -0.44
CCDC40-206ENST00000572083 RASL11AQ6T310 242 aa12.29□□□□□ -0.44
CCDC40-206ENST00000572083 GVQW2A0A096LPI5 108 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms