RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 IGKV3D-20A0A0C4DH25 116 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 SERTM2A0A1B0GWG4 89 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 FAM25EA8MYX2 175 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 IFNA7P01567 189 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 GZMBP10144 247 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 PCP4P48539 62 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 RBX1P62877 108 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 GNG5P63218 68 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 PRR4Q16378 134 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 ZFP69Q49AA0 526 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 SMUG1Q53HV7 270 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.58□□□□□ -1.84
VPS53-208ENST00000570650 OR10G8Q8NGN5 311 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 WDR61Q9GZS3 305 aaKnown RBP3.58□□□□□ -1.84
VPS53-208ENST00000570650 IL36BQ9NZH7 164 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 MBD2Q9UBB5 411 aa3.58□□□□□ -1.84
VPS53-208ENST00000570650 TRAV8-4A0A0B4J246 113 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 NAP1L6A6NFF2 107 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 C17orf112F2Z3M2 114 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 H3BVH4 76 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 P01737 135 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 RPS10P46783 165 aaKnown RBP3.57□□□□□ -1.84
VPS53-208ENST00000570650 CACNG7P62955 275 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 REG3AQ06141 175 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 GAGE6Q13070 117 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 TMEM97Q5BJF2 176 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 OR11H4Q8NGC9 324 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 OR5C1Q8NGR4 320 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 SFRP2Q96HF1 295 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 CRCT1Q9UGL9 99 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 PSG8Q9UQ74 426 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 V9GYH0 126 aa3.57□□□□□ -1.84
VPS53-208ENST00000570650 A0A0A0MQY5 61 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 K7EQM0 130 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 EIF3GO75821 320 aaKnown RBP eCLIP3.56□□□□□ -1.84
VPS53-208ENST00000570650 TCRAP04437 139 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 FLI1Q01543 452 aaPredicted RBP3.56□□□□□ -1.84
VPS53-208ENST00000570650 PQLC2Q6ZP29 291 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 PRNTQ86SH4 94 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 PRR26Q8N8Z3 221 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 NEXN-AS1Q8NBZ9 246 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 LINC00474Q9P2X8 69 aa3.56□□□□□ -1.84
VPS53-208ENST00000570650 TRBV25-1A0A075B6N4 114 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 A0A096LNI7 61 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 FABP5P3A8MUU1 101 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 B4DEV8 164 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 ARMS2P0C7Q2 107 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 RAB5CP51148 216 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 RAB4BP61018 213 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 IL15RAQ13261 267 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 SAPCD1Q5SSQ6 148 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 DNLZQ5SXM8 178 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 CFAP161Q6P656 301 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 NTM-AS1Q6ZSK4 140 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 C15orf56Q8N910 161 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 C5orf17Q8NAS9 161 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 C20orf203Q8NBC4 194 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 PKIGQ9Y2B9 76 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 PHLDA3Q9Y5J5 127 aa3.55□□□□□ -1.84
VPS53-208ENST00000570650 TRBV6-1A0A0K0K1D8 114 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 A0A1W2PPV4 95 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 M0R381 172 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 TPT1P13693 172 aaKnown RBP3.54□□□□□ -1.84
VPS53-208ENST00000570650 BTCP35070 178 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 ZNF56Q15929 161 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 CNPY1Q3B7I2 92 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 HIGD2BQ4VC39 106 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 PRR27Q6MZM9 219 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 ZFP82Q8N141 532 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 DERL1Q9BUN8 251 aa3.54□□□□□ -1.84
VPS53-208ENST00000570650 IGHV1-24A0A0C4DH33 117 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 GRIFINA4D1Z8 144 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 CENPXA8MT69 81 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 KRBOX1C9JBD0 128 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 H3BMQ9 156 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 M0R036 132 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 S100A5P33763 92 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 TMBIM6P55061 237 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 IQCJQ1A5X6 159 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 TRIQKQ629K1 86 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 KRTAP2-2Q9BYT5 123 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 GFRA4Q9GZZ7 299 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 EPDR1Q9UM22 224 aa3.53□□□□□ -1.84
VPS53-208ENST00000570650 IGLV4-60A0A075B6I1 120 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 IGLV1-50A0A075B6I6 118 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 TRAV6A0A075B6T7 132 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 GVQW2A0A096LPI5 108 aaPredicted RBP3.52□□□□□ -1.85
VPS53-208ENST00000570650 A0A1B0GUV1 79 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 HMGB3O15347 200 aaKnown RBP3.52□□□□□ -1.85
VPS53-208ENST00000570650 NOL3O60936 208 aaKnown RBP3.52□□□□□ -1.85
VPS53-208ENST00000570650 ARL14EPLP0DKL9 152 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 SULT1A2P50226 295 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 RAB2AP61019 212 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 FER1L6-AS1Q8NA97 138 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 INO80EQ8NBZ0 244 aaPredicted RBP3.52□□□□□ -1.85
VPS53-208ENST00000570650 SCGB1C1Q8TD33 95 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 DIRC1Q969H9 104 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 AQP10Q96PS8 301 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 SEC22CQ9BRL7 303 aa3.52□□□□□ -1.85
VPS53-208ENST00000570650 ARL2-SNX15V9GYD0 113 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms