RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TRAV4A0A0B4J268 109 aa11.62□□□□□ -0.55
CIITA-204ENST00000570546 GYPEP15421 78 aa11.62□□□□□ -0.55
CIITA-204ENST00000570546 ATP6V0E2Q8NHE4 81 aa11.62□□□□□ -0.55
CIITA-204ENST00000570546 KIAA1549Q9HCM3 1950 aa11.61□□□□□ -0.55
CIITA-204ENST00000570546 C3orf56Q8N813 242 aa11.61□□□□□ -0.55
CIITA-204ENST00000570546 PRB1P04280 392 aa11.61□□□□□ -0.55
CIITA-204ENST00000570546 IGHV3-30-3P0DP02 117 aa11.61□□□□□ -0.55
CIITA-204ENST00000570546 TRBV10-2A0A0K0K1G8 114 aa11.6□□□□□ -0.55
CIITA-204ENST00000570546 TNFRSF13BO14836 293 aaPredicted RBP11.6□□□□□ -0.55
CIITA-204ENST00000570546 RS1O15537 224 aa11.6□□□□□ -0.55
CIITA-204ENST00000570546 CEMP1Q6PRD7 247 aaPredicted RBP11.6□□□□□ -0.55
CIITA-204ENST00000570546 CLEC2BQ92478 149 aa11.6□□□□□ -0.55
CIITA-204ENST00000570546 ZFHX2Q9C0A1 2572 aaPredicted RBP11.59□□□□□ -0.55
CIITA-204ENST00000570546 TRAV25A0A0B4J276 109 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 ODF3Q96PU9 254 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 IGKV2D-26A0A0A0MRZ7 120 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 NFE4Q86UQ8 179 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 TMEM61Q8N0U2 210 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 TM2D2Q9BX73 214 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 TNRC6BQ9UPQ9 1833 aaKnown RBP11.59□□□□□ -0.55
CIITA-204ENST00000570546 LGALS9O00182 355 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 TRACP01848 142 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 PTH2Q96A98 100 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 H0YGX0 51 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 C19orf84I3L1E1 186 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 J3QKU1 62 aa11.59□□□□□ -0.55
CIITA-204ENST00000570546 B5MCH6 92 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 LINC00310P59036 64 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.58□□□□□ -0.56
CIITA-204ENST00000570546 TCL1BO95988 128 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 C11orf71Q6IPW1 123 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 CPAMD8Q8IZJ3 1885 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 P0DMU3 169 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 FAM231AP0DMU4 169 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 FAM231CP0DMU5 169 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 PLCE1Q9P212 2302 aa11.58□□□□□ -0.56
CIITA-204ENST00000570546 MAPKAPK5-AS1Q8N8E1 139 aa11.57□□□□□ -0.56
CIITA-204ENST00000570546 COL5A1P20908 1838 aaPredicted RBP11.57□□□□□ -0.56
CIITA-204ENST00000570546 MAP6D1Q9H9H5 199 aa11.57□□□□□ -0.56
CIITA-204ENST00000570546 Q6ZUT4 128 aa11.57□□□□□ -0.56
CIITA-204ENST00000570546 ZFAND2AQ8N6M9 145 aa11.56□□□□□ -0.56
CIITA-204ENST00000570546 TMEM126AQ9H061 195 aa11.56□□□□□ -0.56
CIITA-204ENST00000570546 SS18L2Q9UHA2 77 aa11.56□□□□□ -0.56
CIITA-204ENST00000570546 IGLV10-54A0A075B6I4 117 aa11.56□□□□□ -0.56
CIITA-204ENST00000570546 A0A0B4J2C4 111 aa11.56□□□□□ -0.56
CIITA-204ENST00000570546 HIST2H2BCQ6DN03 193 aa11.56□□□□□ -0.56
CIITA-204ENST00000570546 Q8N6K4 173 aa11.56□□□□□ -0.56
CIITA-204ENST00000570546 A0A0J9YXY3 114 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 COX7A2LO14548 114 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 H3BT86 120 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 MIAQ16674 131 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 CITED1Q99966 193 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 C2orf91Q6ZV80 131 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 K7EQG2 157 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 C9orf66Q5T8R8 295 aa11.55□□□□□ -0.56
CIITA-204ENST00000570546 RBMY1FQ15415 496 aaKnown RBP11.54□□□□□ -0.56
CIITA-204ENST00000570546 HHLA3Q9XRX5 114 aa11.54□□□□□ -0.56
CIITA-204ENST00000570546 TMEM263Q8WUH6 116 aaKnown RBP11.54□□□□□ -0.56
CIITA-204ENST00000570546 Q8N976 141 aa11.53□□□□□ -0.56
CIITA-204ENST00000570546 HCFC1P51610 2035 aa11.53□□□□□ -0.56
CIITA-204ENST00000570546 TNCP24821 2201 aa11.52□□□□□ -0.56
CIITA-204ENST00000570546 CREBBPQ92793 2442 aa11.52□□□□□ -0.56
CIITA-204ENST00000570546 CDK2AP2O75956 126 aa11.52□□□□□ -0.57
CIITA-204ENST00000570546 SPANXB1Q9NS25 103 aaPredicted RBP11.52□□□□□ -0.57
CIITA-204ENST00000570546 PRR14LQ5THK1 2151 aa11.52□□□□□ -0.57
CIITA-204ENST00000570546 TMEM223A0PJW6 202 aa11.52□□□□□ -0.57
CIITA-204ENST00000570546 NRACQ8N912 160 aa11.52□□□□□ -0.57
CIITA-204ENST00000570546 ATP5G1P05496 136 aa11.52□□□□□ -0.57
CIITA-204ENST00000570546 MRPL23Q16540 153 aaKnown RBP11.52□□□□□ -0.57
CIITA-204ENST00000570546 MIR7-3HGQ8N6C7 128 aa11.51□□□□□ -0.57
CIITA-204ENST00000570546 TRBV10-1A0A0K0K1A3 114 aa11.51□□□□□ -0.57
CIITA-204ENST00000570546 C11orf21Q9P2W6 132 aa11.51□□□□□ -0.57
CIITA-204ENST00000570546 IGKV2D-24A0A075B6R9 120 aa11.51□□□□□ -0.57
CIITA-204ENST00000570546 CITED2Q99967 270 aaPredicted RBP11.51□□□□□ -0.57
CIITA-204ENST00000570546 ZNF22P17026 224 aaPredicted RBP11.5□□□□□ -0.57
CIITA-204ENST00000570546 RMI2Q96E14 147 aa11.5□□□□□ -0.57
CIITA-204ENST00000570546 ESM1Q9NQ30 184 aa11.5□□□□□ -0.57
CIITA-204ENST00000570546 IGLV4-3A0A075B6K6 122 aa11.5□□□□□ -0.57
CIITA-204ENST00000570546 M0QY20 66 aa11.5□□□□□ -0.57
CIITA-204ENST00000570546 PRORYQ9H606 182 aa11.5□□□□□ -0.57
CIITA-204ENST00000570546 FAM236AA0A1B0GUQ0 79 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 FAM236BA0A1B0GV22 79 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 SPART-AS1P0CW21 52 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 PRR9Q5T870 116 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 URB1-AS1Q96HZ7 61 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 LINC00467Q9BRT7 94 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 LECT2O14960 151 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 Q6YL49 198 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 IGKV3D-7A0A0C4DH55 119 aa11.49□□□□□ -0.57
CIITA-204ENST00000570546 GAS8-AS1O95177 125 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 NCR3O14931 201 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 RBX1P62877 108 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 IGHV4-4A0A075B6R2 117 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 IGHV3-30P01768 117 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 IGHV3-33P01772 117 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 IGHV3-30-5P0DP03 117 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 CAMK2N2Q96S95 79 aa11.48□□□□□ -0.57
CIITA-204ENST00000570546 NOTCH3Q9UM47 2321 aa11.47□□□□□ -0.57
CIITA-204ENST00000570546 Q6ZTI0 123 aa11.47□□□□□ -0.57
CIITA-204ENST00000570546 DNAJC9-AS1A6NH13 148 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms