RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 H3BMM0 161 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 DPM2O94777 84 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 DEFB114Q30KQ6 69 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 Q8N2B8 174 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 SYT8Q8NBV8 401 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 RAB37Q96AX2 223 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 OPRPNQ99935 248 aaPredicted RBP7.31□□□□□ -1.24
VPS53-206ENST00000570359 NBEAL2Q6ZNJ1 2754 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 ATP5LO75964 103 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 LINC00315P59091 139 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 RNF152Q8N8N0 203 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 LINC01006Q8NI28 216 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 CLUHP3Q96NS8 147 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 MRPL16Q9NX20 251 aaKnown RBP7.31□□□□□ -1.24
VPS53-206ENST00000570359 Q9UF83 564 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 A6NDN8 102 aa7.3□□□□□ -1.24
VPS53-206ENST00000570359 KIF25-AS1Q9Y6Z4 181 aa7.3□□□□□ -1.24
VPS53-206ENST00000570359 ANK3Q12955 4377 aaKnown RBP7.3□□□□□ -1.24
VPS53-206ENST00000570359 FGF6P10767 208 aa7.3□□□□□ -1.24
VPS53-206ENST00000570359 HLA-DRB4P13762 266 aa7.3□□□□□ -1.24
VPS53-206ENST00000570359 ORMDL2Q53FV1 153 aa7.3□□□□□ -1.24
VPS53-206ENST00000570359 HLA-DRB4X5D2U9 266 aa7.3□□□□□ -1.24
VPS53-206ENST00000570359 VWFP04275 2813 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 TMEM97Q5BJF2 176 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 ATRQ13535 2644 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 TRBV7-9A0A0J9YWB2 115 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 MED14OSP0DP75 135 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 RPL35AP18077 110 aaKnown RBP7.29□□□□□ -1.24
VPS53-206ENST00000570359 GCSHP23434 173 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 RNASE13Q5GAN3 156 aaKnown RBP7.29□□□□□ -1.24
VPS53-206ENST00000570359 C9orf85Q96MD7 179 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 JMJD8Q96S16 334 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 KIR2DL4Q99706 377 aa7.29□□□□□ -1.24
VPS53-206ENST00000570359 IGHV3-38A0A0C4DH36 116 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 IGHV3-53P01767 116 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 CRYGDP07320 174 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 ODF3L2Q3SX64 289 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 CFAP161Q6P656 301 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 STHQ8IWL8 128 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 SIGMAR1Q99720 223 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 C20orf78Q9BR46 151 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 HHLA3Q9XRX5 114 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 SCGB2A2Q13296 93 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 ZFP2Q6ZN57 461 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 BAALCQ8WXS3 180 aa7.28□□□□□ -1.24
VPS53-206ENST00000570359 TRGV11A0A075B6L2 103 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 IGHV3-64A0A075B6Q5 118 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 A0A087WX48 190 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 PRSS29PA6NIE9 313 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 AZU1P20160 251 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 MORN3Q6PF18 240 aaPredicted RBP7.27□□□□□ -1.25
VPS53-206ENST00000570359 PHLDA1Q8WV24 401 aaPredicted RBP7.27□□□□□ -1.25
VPS53-206ENST00000570359 TOMM6Q96B49 74 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 CYSLTR1Q9Y271 337 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 LINC01546A6NGU7 62 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 A6NJY4 79 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 SIVA1O15304 175 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 BOD1L2Q8IYS8 172 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 MAPKAPK5-AS1Q8N8E1 139 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 TENM1Q9UKZ4 2725 aa7.27□□□□□ -1.25
VPS53-206ENST00000570359 NXPH4O95158 308 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 CEMP1Q6PRD7 247 aaPredicted RBP7.26□□□□□ -1.25
VPS53-206ENST00000570359 ZNF418Q8TF45 676 aaPredicted RBP7.26□□□□□ -1.25
VPS53-206ENST00000570359 SPAG8Q99932 426 aaPredicted RBP7.26□□□□□ -1.25
VPS53-206ENST00000570359 OR11H12B2RN74 326 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 K7ERJ3 54 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 M0QY20 66 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 Q6ZSN1 163 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 TMEM86BQ8N661 226 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 ODF3Q96PU9 254 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 HIVEP1P15822 2718 aa7.26□□□□□ -1.25
VPS53-206ENST00000570359 A0A1W2PPM0 123 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 H7C1H1 209 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 VCYO14598 125 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 HSD52Q0P140 79 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 TSSC4Q9Y5U2 329 aaPredicted RBP7.25□□□□□ -1.25
VPS53-206ENST00000570359 NSD1Q96L73 2696 aaPredicted RBP7.25□□□□□ -1.25
VPS53-206ENST00000570359 F8VRH5 84 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 INSP01308 110 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 TRGV1A0A0A0MS02 117 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 INAFM1C9JVW0 142 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 LY6G6DO95868 133 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 TMEM170BQ5T4T1 132 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 MTURNQ8N3F0 131 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 SPATA25Q9BR10 227 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 CHAC1Q9BUX1 264 aa7.25□□□□□ -1.25
VPS53-206ENST00000570359 H3BUT2 72 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 TSHBP01222 138 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 POLR2KP53803 58 aaKnown RBP7.24□□□□□ -1.25
VPS53-206ENST00000570359 ZNF415Q09FC8 603 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 NEXN-AS1Q8NBZ9 246 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 TEP1Q99973 2627 aaKnown RBP7.24□□□□□ -1.25
VPS53-206ENST00000570359 TRBV25-1A0A075B6N4 114 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 PPP1R17O96001 155 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 TEX29Q8N6K0 151 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 ZMAT4Q9H898 229 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 SPCS1Q9Y6A9 102 aa7.24□□□□□ -1.25
VPS53-206ENST00000570359 C11orf86A6NJI1 115 aa7.23□□□□□ -1.25
VPS53-206ENST00000570359 J3QR89 54 aa7.23□□□□□ -1.25
VPS53-206ENST00000570359 RNASE1P07998 156 aaKnown RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms