RNA–Protein interactions for RNA: ENST00000568108.1

PTPN9-205, Transcript of protein tyrosine phosphatase, non-receptor type 9, human

TSL 2

Gene PTPN9, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN9-205	ENST00000568108	LOC389332	A0A1B0GUA5	103 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	LINC01546	A6NGU7	62 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	PRSS29P	A6NIE9	313 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	LINC01549	A6NIU2	74 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	GIG44	P09565	113 aa	Predicted RBP	4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	IGLC3	P0DOY3	106 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	MIF	P14174	115 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	IFI27	P40305	119 aa	Predicted RBP	4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	SST	P61278	116 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	LINC01545	Q5VT33	79 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	FAM159A	Q6UWV7	190 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108		Q6ZTC4	211 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108		Q8N8P6	123 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	C20orf173	Q96LM9	149 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	FAM19A4	Q96LR4	140 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	AP1S3	Q96PC3	154 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	DPH3P1	Q9H4G8	78 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	MRPS16	Q9Y3D3	137 aa	Known RBP	4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	PHLDA3	Q9Y5J5	127 aa		4.58	□□□□□ -1.68
PTPN9-205	ENST00000568108	AGRN	O00468	2067 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	PRSS47	A8MTI9	375 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108		H3BVH4	76 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108		M0R2N4	97 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108		M0R381	172 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	ATP5L	O75964	103 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	TNFRSF6B	O95407	300 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	NPY	P01303	97 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	SMIM17	P0DL12	118 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108		P0DMU3	169 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	FAM231A	P0DMU4	169 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	FAM231C	P0DMU5	169 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	FCER1G	P30273	86 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	RNASE4	P34096	147 aa	Known RBP	4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	LGALS9B	Q3B8N2	356 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	COL5A1-AS1	Q5SY13	56 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	MORN3	Q6PF18	240 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	ZFAND2A	Q8N6M9	145 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	POM121L12	Q8N7R1	296 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	SYT8	Q8NBV8	401 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	RNF185	Q96GF1	192 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	C20orf78	Q9BR46	151 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	GOLT1B	Q9Y3E0	138 aa		4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN9-205	ENST00000568108	VPS13D	Q5THJ4	4388 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	DEFB131B	A0A096LNP1	70 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	MUC21	A0A0G2JKD1	596 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	MUC21	A0A140T8X8	626 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	C7orf71	A4D174	169 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	KNCN	A6PVL3	124 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	KLLN	B2CW77	178 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108		K7EQG2	157 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	RTL8C	O15255	209 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	PRB4	P10163	310 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	NUTF2	P61970	127 aa	Known RBP	4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	LAGE3	Q14657	143 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	C12orf74	Q32Q52	190 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	TDRG1	Q3Y452	100 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	ORMDL2	Q53FV1	153 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	MUC21	Q5SSG8	566 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	SLC25A34	Q6PIV7	304 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	FOXI2	Q6ZQN5	318 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	TRPT1	Q86TN4	253 aa	Known RBP	4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	ATOH7	Q8N100	152 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	DCANP1	Q8TF63	244 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	IFI27L1	Q96BM0	104 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	SNHG12	Q9BXW3	62 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	HECTD4	Q9Y4D8	3996 aa		4.56	□□□□□ -1.68
PTPN9-205	ENST00000568108	TRGV11	A0A075B6L2	103 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108		A0A1B0GV90	55 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108		H0Y8G0	127 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	SMKR1	H3BMG3	65 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	NXPH4	O95158	308 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	NCR2	O95944	276 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	ZNF688	P0C7X2	276 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	EVI2A	P22794	236 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	ANXA2R	Q3ZCQ2	193 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	CSNK1G2-AS1	Q8NCQ2	148 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	SCRT2	Q9NQ03	307 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	C11orf21	Q9P2W6	132 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	CELA1	Q9UNI1	258 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108	PCLO	Q9Y6V0	5065 aa		4.55	□□□□□ -1.68
PTPN9-205	ENST00000568108		A0A0J9YX75	114 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108		J3KRW8	73 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	TCAP	O15273	167 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	MGP	P08493	103 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	CDKN1B	P46527	198 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	BATF	Q16520	125 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	PRR9	Q5T870	116 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	SMIM2	Q9BVW6	85 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	KRTAP4-5	Q9BYR2	181 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	MSRB1	Q9NZV6	116 aa		4.54	□□□□□ -1.68
PTPN9-205	ENST00000568108	RYR1	P21817	5038 aa		4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108	IGLV2-18	A0A075B6J9	118 aa		4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108		A0A096LNJ9	63 aa		4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108	hDV102S1	A0JD36	115 aa		4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108		F6UB75	175 aa		4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108	NUDT3	O95989	172 aa		4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108	PRSS1	P07477	247 aa		4.53	□□□□□ -1.68
PTPN9-205	ENST00000568108	COX8A	P10176	69 aa		4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms