RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 PLA2G10O15496 165 aa10.35□□□□□ -0.75
CDH3-205ENST00000566808 GCHFRP30047 84 aa10.35□□□□□ -0.75
CDH3-205ENST00000566808 CDC34P49427 236 aaPredicted RBP10.35□□□□□ -0.75
CDH3-205ENST00000566808 CFAP161Q6P656 301 aa10.35□□□□□ -0.75
CDH3-205ENST00000566808 PSORS1C2Q9UIG4 136 aa10.35□□□□□ -0.75
CDH3-205ENST00000566808 TRAV34A0A0B4J273 112 aa10.34□□□□□ -0.75
CDH3-205ENST00000566808 SH2D1AO60880 128 aa10.34□□□□□ -0.75
CDH3-205ENST00000566808 H2AFB2P0C5Z0 115 aa10.34□□□□□ -0.75
CDH3-205ENST00000566808 SMIM3Q9BZL3 60 aa10.34□□□□□ -0.75
CDH3-205ENST00000566808 PKIGQ9Y2B9 76 aa10.34□□□□□ -0.75
CDH3-205ENST00000566808 IGHV1-24A0A0C4DH33 117 aa10.33□□□□□ -0.76
CDH3-205ENST00000566808 RAB5CP51148 216 aa10.33□□□□□ -0.76
CDH3-205ENST00000566808 FAM162BQ5T6X4 162 aa10.33□□□□□ -0.76
CDH3-205ENST00000566808 TMEM167BQ9NRX6 74 aa10.33□□□□□ -0.76
CDH3-205ENST00000566808 SIX6O95475 246 aa10.32□□□□□ -0.76
CDH3-205ENST00000566808 CRIP1P50238 77 aa10.32□□□□□ -0.76
CDH3-205ENST00000566808 CACNG7P62955 275 aa10.32□□□□□ -0.76
CDH3-205ENST00000566808 LINC01559Q495D7 138 aa10.32□□□□□ -0.76
CDH3-205ENST00000566808 TMSB15BA0A087X1C1 80 aa10.31□□□□□ -0.76
CDH3-205ENST00000566808 A0A1B0GUV1 79 aa10.31□□□□□ -0.76
CDH3-205ENST00000566808 HIGD2BQ4VC39 106 aa10.31□□□□□ -0.76
CDH3-205ENST00000566808 COX8CQ7Z4L0 72 aa10.31□□□□□ -0.76
CDH3-205ENST00000566808 GFRA4Q9GZZ7 299 aa10.31□□□□□ -0.76
CDH3-205ENST00000566808 IGLV4-60A0A075B6I1 120 aa10.3□□□□□ -0.76
CDH3-205ENST00000566808 CCDC160A6NGH7 325 aa10.3□□□□□ -0.76
CDH3-205ENST00000566808 CYCSP99999 105 aaKnown RBP10.3□□□□□ -0.76
CDH3-205ENST00000566808 RAB24Q969Q5 203 aa10.3□□□□□ -0.76
CDH3-205ENST00000566808 AQP10Q96PS8 301 aa10.3□□□□□ -0.76
CDH3-205ENST00000566808 GVQW2A0A096LPI5 108 aaPredicted RBP10.29□□□□□ -0.76
CDH3-205ENST00000566808 A0A1W2PRE2 83 aa10.29□□□□□ -0.76
CDH3-205ENST00000566808 PEX7O00628 323 aa10.29□□□□□ -0.76
CDH3-205ENST00000566808 PET100P0DJ07 73 aa10.29□□□□□ -0.76
CDH3-205ENST00000566808 GAGE12HA6NDE8 117 aa10.28□□□□□ -0.76
CDH3-205ENST00000566808 F5H697 171 aa10.28□□□□□ -0.76
CDH3-205ENST00000566808 CXorf1O96002 111 aa10.28□□□□□ -0.76
CDH3-205ENST00000566808 RPL12P30050 165 aaKnown RBP10.28□□□□□ -0.76
CDH3-205ENST00000566808 SULT1A2P50226 295 aa10.28□□□□□ -0.76
CDH3-205ENST00000566808 OR10AG1Q8NH19 301 aa10.28□□□□□ -0.76
CDH3-205ENST00000566808 PPP1R1CQ8WVI7 109 aa10.28□□□□□ -0.76
CDH3-205ENST00000566808 ZFP30Q9Y2G7 519 aa10.28□□□□□ -0.76
CDH3-205ENST00000566808 PRR4Q16378 134 aa10.27□□□□□ -0.77
CDH3-205ENST00000566808 ZNF674Q2M3X9 581 aa10.27□□□□□ -0.77
CDH3-205ENST00000566808 TMEM243Q9BU79 118 aa10.27□□□□□ -0.77
CDH3-205ENST00000566808 ZNF471Q9BX82 626 aaPredicted RBP10.27□□□□□ -0.77
CDH3-205ENST00000566808 WFDC1Q9HC57 220 aa10.27□□□□□ -0.77
CDH3-205ENST00000566808 PRR26Q8N8Z3 221 aa10.26□□□□□ -0.77
CDH3-205ENST00000566808 HIST1H2BAQ96A08 127 aa10.25□□□□□ -0.77
CDH3-205ENST00000566808 FAM240BA0A1B0GVZ2 78 aa10.24□□□□□ -0.77
CDH3-205ENST00000566808 MPC2O95563 127 aa10.24□□□□□ -0.77
CDH3-205ENST00000566808 A6NHS1 94 aa10.23□□□□□ -0.77
CDH3-205ENST00000566808 CXCL1P09341 107 aa10.23□□□□□ -0.77
CDH3-205ENST00000566808 H2BFSP57053 126 aa10.23□□□□□ -0.77
CDH3-205ENST00000566808 INO80EQ8NBZ0 244 aaPredicted RBP10.23□□□□□ -0.77
CDH3-205ENST00000566808 FMC1Q96HJ9 113 aa10.23□□□□□ -0.77
CDH3-205ENST00000566808 UBE2L6O14933 153 aa10.22□□□□□ -0.77
CDH3-205ENST00000566808 MBP02144 154 aa10.22□□□□□ -0.77
CDH3-205ENST00000566808 SMIM17P0DL12 118 aa10.22□□□□□ -0.77
CDH3-205ENST00000566808 UBE2G1P62253 170 aa10.22□□□□□ -0.77
CDH3-205ENST00000566808 SPANXN1Q5VSR9 72 aa10.22□□□□□ -0.77
CDH3-205ENST00000566808 AP1S3Q96PC3 154 aa10.22□□□□□ -0.77
CDH3-205ENST00000566808 PSMG3Q9BT73 122 aaPredicted RBP10.22□□□□□ -0.77
CDH3-205ENST00000566808 SNAI2O43623 268 aa10.21□□□□□ -0.77
CDH3-205ENST00000566808 MT-ND6P03923 174 aa10.21□□□□□ -0.77
CDH3-205ENST00000566808 PGLYRP4Q96LB8 373 aa10.21□□□□□ -0.77
CDH3-205ENST00000566808 CARD19Q96LW7 228 aa10.21□□□□□ -0.77
CDH3-205ENST00000566808 NKX6-2Q9C056 277 aaPredicted RBP10.21□□□□□ -0.77
CDH3-205ENST00000566808 ACTR3CQ9C0K3 210 aaPredicted RBP10.21□□□□□ -0.77
CDH3-205ENST00000566808 UBE2G2P60604 165 aa10.2□□□□□ -0.78
CDH3-205ENST00000566808 FER1L6-AS1Q8NA97 138 aa10.2□□□□□ -0.78
CDH3-205ENST00000566808 CHCHD10Q8WYQ3 142 aaPredicted RBP10.2□□□□□ -0.78
CDH3-205ENST00000566808 DIRC1Q969H9 104 aa10.2□□□□□ -0.78
CDH3-205ENST00000566808 IGLV1-50A0A075B6I6 118 aa10.19□□□□□ -0.78
CDH3-205ENST00000566808 IGKV3OR2-268A0A0C4DH90 116 aa10.19□□□□□ -0.78
CDH3-205ENST00000566808 M0QY20 66 aa10.19□□□□□ -0.78
CDH3-205ENST00000566808 LTAP01374 205 aa10.19□□□□□ -0.78
CDH3-205ENST00000566808 OR5AL1P0C617 328 aa10.19□□□□□ -0.78
CDH3-205ENST00000566808 SERF2P84101 59 aa10.19□□□□□ -0.78
CDH3-205ENST00000566808 SSBP4Q9BWG4 385 aaPredicted RBP10.19□□□□□ -0.78
CDH3-205ENST00000566808 MED28Q9H204 178 aa10.19□□□□□ -0.78
CDH3-205ENST00000566808 MUC21A0A140T8X8 626 aa10.18□□□□□ -0.78
CDH3-205ENST00000566808 FAM74A7A6NL05 159 aa10.18□□□□□ -0.78
CDH3-205ENST00000566808 PTTG1IPP53801 180 aa10.18□□□□□ -0.78
CDH3-205ENST00000566808 ATP6V0CP27449 155 aa10.17□□□□□ -0.78
CDH3-205ENST00000566808 AMTP48728 403 aa10.17□□□□□ -0.78
CDH3-205ENST00000566808 C1orf137Q5JT78 98 aa10.17□□□□□ -0.78
CDH3-205ENST00000566808 MZT2BQ6NZ67 158 aa10.17□□□□□ -0.78
CDH3-205ENST00000566808 MGPP08493 103 aa10.16□□□□□ -0.78
CDH3-205ENST00000566808 NKX2-5P52952 324 aaPredicted RBP10.16□□□□□ -0.78
CDH3-205ENST00000566808 DEFA3P59666 94 aa10.16□□□□□ -0.78
CDH3-205ENST00000566808 CCDC32Q9BV29 185 aa10.16□□□□□ -0.78
CDH3-205ENST00000566808 TNFSF18Q9UNG2 199 aa10.16□□□□□ -0.78
CDH3-205ENST00000566808 H0Y9J4 135 aa10.15□□□□□ -0.78
CDH3-205ENST00000566808 FOXI1Q12951 378 aa10.15□□□□□ -0.78
CDH3-205ENST00000566808 SUMO4Q6EEV6 95 aa10.15□□□□□ -0.78
CDH3-205ENST00000566808 TCEAL7Q9BRU2 100 aa10.15□□□□□ -0.78
CDH3-205ENST00000566808 IGHV1-58A0A0C4DH39 117 aa10.14□□□□□ -0.79
CDH3-205ENST00000566808 SSTP61278 116 aa10.14□□□□□ -0.79
CDH3-205ENST00000566808 COTL1Q14019 142 aa10.14□□□□□ -0.79
CDH3-205ENST00000566808 LINC00526Q96FQ7 95 aa10.14□□□□□ -0.79
CDH3-205ENST00000566808 LOC107984640A0A0U1RRK4 108 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms