RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SH2D6Q7Z4S9 175 aa14.38□□□□□ -0.11
CLN3-212ENST00000564574 NEXN-AS1Q8NBZ9 246 aa14.38□□□□□ -0.11
CLN3-212ENST00000564574 KMT2CQ8NEZ4 4911 aaKnown RBP14.37□□□□□ -0.11
CLN3-212ENST00000564574 TRBV7-3A0A075B6L6 115 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 LOC100131303A0A0U1RQF7 123 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 APCSP02743 223 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 P0DMU3 169 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 FAM231AP0DMU4 169 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 FAM231CP0DMU5 169 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 SRIP30626 198 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 CKS2P33552 79 aa14.37□□□□□ -0.11
CLN3-212ENST00000564574 A0A096LPF7 62 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 GAGE12JA6NER3 117 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 NUDT3O95989 172 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 LINC00694P0DN24 101 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 GAGE1Q13065 139 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 GAGE4Q13068 117 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 GAGE5Q13069 117 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 GAGE13Q4V321 117 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 ORMDL3Q8N138 153 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 ZNRF2Q8NHG8 242 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 APLNQ9ULZ1 77 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 TNFRSF18Q9Y5U5 241 aa14.36□□□□□ -0.11
CLN3-212ENST00000564574 COLCA2A8K830 154 aa14.35□□□□□ -0.11
CLN3-212ENST00000564574 OR10J3Q5JRS4 329 aa14.35□□□□□ -0.11
CLN3-212ENST00000564574 CASC10Q5T4H9 136 aa14.35□□□□□ -0.11
CLN3-212ENST00000564574 MRPL18Q9H0U6 180 aaKnown RBP14.35□□□□□ -0.11
CLN3-212ENST00000564574 TRAPPC1Q9Y5R8 145 aa14.35□□□□□ -0.11
CLN3-212ENST00000564574 TRBV6-5A0A0K0K1A5 114 aa14.34□□□□□ -0.11
CLN3-212ENST00000564574 D6R8Y8 96 aa14.34□□□□□ -0.11
CLN3-212ENST00000564574 SMKR1H3BMG3 65 aa14.34□□□□□ -0.11
CLN3-212ENST00000564574 NCR2O95944 276 aa14.34□□□□□ -0.11
CLN3-212ENST00000564574 NEGR1Q7Z3B1 354 aa14.34□□□□□ -0.11
CLN3-212ENST00000564574 RPL39LQ96EH5 51 aaKnown RBP14.34□□□□□ -0.11
CLN3-212ENST00000564574 Q9UF83 564 aa14.34□□□□□ -0.11
CLN3-212ENST00000564574 LAMTOR2Q9Y2Q5 125 aa14.34□□□□□ -0.11
CLN3-212ENST00000564574 PHOX2AO14813 284 aa14.33□□□□□ -0.12
CLN3-212ENST00000564574 UBE2D3P61077 147 aa14.33□□□□□ -0.12
CLN3-212ENST00000564574 UBE2D2P62837 147 aa14.33□□□□□ -0.12
CLN3-212ENST00000564574 NRACQ8N912 160 aa14.33□□□□□ -0.12
CLN3-212ENST00000564574 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.33□□□□□ -0.12
CLN3-212ENST00000564574 GAS8-AS1O95177 125 aa14.32□□□□□ -0.12
CLN3-212ENST00000564574 FABP9Q0Z7S8 132 aa14.32□□□□□ -0.12
CLN3-212ENST00000564574 ATP6V0E2Q8NHE4 81 aa14.32□□□□□ -0.12
CLN3-212ENST00000564574 PRELID3AQ96N28 172 aa14.32□□□□□ -0.12
CLN3-212ENST00000564574 RPS10P46783 165 aaKnown RBP14.31□□□□□ -0.12
CLN3-212ENST00000564574 DAZ4Q86SG3 579 aaKnown RBP14.31□□□□□ -0.12
CLN3-212ENST00000564574 ST20Q9HBF5 79 aa14.31□□□□□ -0.12
CLN3-212ENST00000564574 DAZ3Q9NR90 486 aaKnown RBP14.31□□□□□ -0.12
CLN3-212ENST00000564574 TNFRSF6BO95407 300 aa14.3□□□□□ -0.12
CLN3-212ENST00000564574 RAB5AP20339 215 aa14.3□□□□□ -0.12
CLN3-212ENST00000564574 C20orf78Q9BR46 151 aa14.3□□□□□ -0.12
CLN3-212ENST00000564574 CSMD3Q7Z407 3707 aa14.3□□□□□ -0.12
CLN3-212ENST00000564574 STARD9Q9P2P6 4700 aa14.29□□□□□ -0.12
CLN3-212ENST00000564574 SDHAF1A6NFY7 115 aa14.29□□□□□ -0.12
CLN3-212ENST00000564574 TIRAPP58753 221 aa14.29□□□□□ -0.12
CLN3-212ENST00000564574 KIAA1644Q3SXP7 199 aa14.29□□□□□ -0.12
CLN3-212ENST00000564574 NPYP01303 97 aa14.28□□□□□ -0.12
CLN3-212ENST00000564574 SUMO2P61956 95 aaKnown RBP14.28□□□□□ -0.12
CLN3-212ENST00000564574 RPL32P62910 135 aaKnown RBP14.28□□□□□ -0.12
CLN3-212ENST00000564574 TMEM97Q5BJF2 176 aa14.28□□□□□ -0.12
CLN3-212ENST00000564574 GTSF1LQ9H1H1 148 aa14.28□□□□□ -0.12
CLN3-212ENST00000564574 POLR2KP53803 58 aaKnown RBP14.27□□□□□ -0.13
CLN3-212ENST00000564574 TMEM70Q9BUB7 260 aa14.27□□□□□ -0.13
CLN3-212ENST00000564574 PRSS47A8MTI9 375 aa14.26□□□□□ -0.13
CLN3-212ENST00000564574 LYPD5Q6UWN5 251 aa14.26□□□□□ -0.13
CLN3-212ENST00000564574 ALKBH7Q9BT30 221 aaPredicted RBP14.26□□□□□ -0.13
CLN3-212ENST00000564574 RYR3Q15413 4870 aa14.25□□□□□ -0.13
CLN3-212ENST00000564574 I3L3M4 83 aa14.25□□□□□ -0.13
CLN3-212ENST00000564574 VCYO14598 125 aa14.25□□□□□ -0.13
CLN3-212ENST00000564574 CCL18P55774 89 aa14.25□□□□□ -0.13
CLN3-212ENST00000564574 MAP1LC3AQ9H492 121 aa14.25□□□□□ -0.13
CLN3-212ENST00000564574 IGHV3-38A0A0C4DH36 116 aa14.24□□□□□ -0.13
CLN3-212ENST00000564574 TRBV27A0A0K0K1C4 114 aa14.24□□□□□ -0.13
CLN3-212ENST00000564574 ESRGQ1W209 222 aa14.24□□□□□ -0.13
CLN3-212ENST00000564574 SMIM2Q9BVW6 85 aa14.24□□□□□ -0.13
CLN3-212ENST00000564574 TRGC2P03986 189 aa14.23□□□□□ -0.13
CLN3-212ENST00000564574 PMCHP20382 165 aa14.23□□□□□ -0.13
CLN3-212ENST00000564574 PLECQ15149 4684 aaKnown RBP14.22□□□□□ -0.13
CLN3-212ENST00000564574 COTL1Q14019 142 aa14.22□□□□□ -0.13
CLN3-212ENST00000564574 LELP1Q5T871 98 aa14.22□□□□□ -0.13
CLN3-212ENST00000564574 TCAPO15273 167 aa14.21□□□□□ -0.13
CLN3-212ENST00000564574 KIR2DL4Q99706 377 aa14.21□□□□□ -0.13
CLN3-212ENST00000564574 MRPS16Q9Y3D3 137 aaKnown RBP14.21□□□□□ -0.13
CLN3-212ENST00000564574 TRBV6-8A0A0A6YYG3 113 aa14.2□□□□□ -0.14
CLN3-212ENST00000564574 UBE2DNLQ8IWF7 75 aa14.2□□□□□ -0.14
CLN3-212ENST00000564574 LINC00588Q9Y4M8 146 aa14.2□□□□□ -0.14
CLN3-212ENST00000564574 LGALS9CQ6DKI2 356 aa14.19□□□□□ -0.14
CLN3-212ENST00000564574 Q8N8P6 123 aa14.19□□□□□ -0.14
CLN3-212ENST00000564574 UPK3BQ9BT76 320 aa14.19□□□□□ -0.14
CLN3-212ENST00000564574 NXT2Q9NPJ8 142 aaKnown RBP14.19□□□□□ -0.14
CLN3-212ENST00000564574 IGLV2-18A0A075B6J9 118 aa14.18□□□□□ -0.14
CLN3-212ENST00000564574 TRBV25-1A0A075B6N4 114 aa14.18□□□□□ -0.14
CLN3-212ENST00000564574 TRAV8-6A0A0B4J262 113 aa14.18□□□□□ -0.14
CLN3-212ENST00000564574 IGHV1-24A0A0C4DH33 117 aa14.18□□□□□ -0.14
CLN3-212ENST00000564574 LOC389332A0A1B0GUA5 103 aa14.18□□□□□ -0.14
CLN3-212ENST00000564574 IQCJQ1A5X6 159 aa14.18□□□□□ -0.14
CLN3-212ENST00000564574 NTM-AS1Q6ZSK4 140 aa14.18□□□□□ -0.14
CLN3-212ENST00000564574 K7EMI3 77 aa14.17□□□□□ -0.14
CLN3-212ENST00000564574 TSHBP01222 138 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms