RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 SNURFQ9Y675 71 aa4.78□□□□□ -1.64
CLK3-212ENST00000563418 Q8N7P7 452 aa4.78□□□□□ -1.64
CLK3-212ENST00000563418 C2orf16Q68DN1 1984 aa4.78□□□□□ -1.64
CLK3-212ENST00000563418 ZNF561-AS1K7EIQ3 104 aa4.78□□□□□ -1.64
CLK3-212ENST00000563418 SAP25Q8TEE9 199 aa4.78□□□□□ -1.64
CLK3-212ENST00000563418 WT1P19544 449 aaPredicted RBP4.78□□□□□ -1.64
CLK3-212ENST00000563418 CPAMD8Q8IZJ3 1885 aa4.78□□□□□ -1.64
CLK3-212ENST00000563418 TRGV1A0A0A0MS02 117 aa4.78□□□□□ -1.64
CLK3-212ENST00000563418 ITLN2Q8WWU7 325 aaPredicted RBP4.78□□□□□ -1.64
CLK3-212ENST00000563418 PRRC2AP48634 2157 aaKnown RBP4.77□□□□□ -1.65
CLK3-212ENST00000563418 Q6ZPA2 131 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 CHKB-CPT1BH3BT56 60 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 K7EIM0 57 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 SMCPP49901 116 aaPredicted RBP4.77□□□□□ -1.65
CLK3-212ENST00000563418 POLEQ07864 2286 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 CEP192Q8TEP8 1941 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 H3BUA1 57 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 GNLYP22749 145 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 ZNF80P51504 273 aaPredicted RBP4.77□□□□□ -1.65
CLK3-212ENST00000563418 STHQ8IWL8 128 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 CFHR1Q03591 330 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 DEFB121Q5J5C9 76 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 SPTA1P02549 2419 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 NHLRC4P0CG21 123 aaPredicted RBP4.77□□□□□ -1.65
CLK3-212ENST00000563418 CXCL6P80162 114 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 KAAG1Q9UBP8 84 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 PRYO14603 147 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 BPY2O14599 106 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 LINC00574Q9H8X3 128 aa4.77□□□□□ -1.65
CLK3-212ENST00000563418 TRBV27A0A0K0K1C4 114 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 PROK2Q9HC23 129 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 A0A096LNJ9 63 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 LOXP28300 417 aaPredicted RBP4.76□□□□□ -1.65
CLK3-212ENST00000563418 NAV3Q8IVL0 2385 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 C11orf53Q8IXP5 236 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 NPBQ8NG41 125 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 IGLV11-55A0A075B6I3 123 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 LHBP01229 141 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 PRB4P10163 310 aaPredicted RBP4.76□□□□□ -1.65
CLK3-212ENST00000563418 EBI3Q14213 229 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 DEFB104AQ8WTQ1 72 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 TPSG1Q9NRR2 321 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 MED13Q9UHV7 2174 aa4.76□□□□□ -1.65
CLK3-212ENST00000563418 PRR14LQ5THK1 2151 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 SPTBN2O15020 2390 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 SPRY2O43597 315 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 FGF23Q9GZV9 251 aaPredicted RBP4.75□□□□□ -1.65
CLK3-212ENST00000563418 NCR3O14931 201 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 LINC01565O15544 149 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 TRBV6-5A0A0K0K1A5 114 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 ROS1P08922 2347 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 CRIP2P52943 208 aaPredicted RBP4.75□□□□□ -1.65
CLK3-212ENST00000563418 COX8CQ7Z4L0 72 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 IBA57-AS1B1ANH7 110 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 IGLV2-23P01705 113 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 BRWD1-AS2P59051 145 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 APRG1Q8IVJ8 170 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 C9orf106Q8NAJ2 232 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 RNASE6Q93091 150 aaKnown RBP4.75□□□□□ -1.65
CLK3-212ENST00000563418 IGHV4OR15-8A0A075B7B6 117 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 A0A087WW49 117 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 K7ENP7 123 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 LIMD2Q9BT23 127 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 MIR7-3HGQ8N6C7 128 aa4.75□□□□□ -1.65
CLK3-212ENST00000563418 APC2O95996 2303 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 PTPRBP23467 1997 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 PRB3Q04118 309 aaPredicted RBP4.74□□□□□ -1.65
CLK3-212ENST00000563418 CASC2Q6XLA1 102 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 GNRH2O43555 120 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 PTPRSQ13332 1948 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.74□□□□□ -1.65
CLK3-212ENST00000563418 IGKV2-29A2NJV5 120 aaPredicted RBP4.74□□□□□ -1.65
CLK3-212ENST00000563418 IGHV3-11P01762 117 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 RPL28P46779 137 aaKnown RBP4.74□□□□□ -1.65
CLK3-212ENST00000563418 RNASE13Q5GAN3 156 aaKnown RBP4.74□□□□□ -1.65
CLK3-212ENST00000563418 Q6ZS46 218 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 SPRR3Q9UBC9 169 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 IGHV7-4-1A0A0J9YVY3 117 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 IGLV1-44P01699 117 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 TFF2Q03403 129 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 NKAPP1Q8N9T2 125 aa4.74□□□□□ -1.65
CLK3-212ENST00000563418 IGLV4-3A0A075B6K6 122 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 CREBBPQ92793 2442 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 IGLV3-9A0A075B6K5 115 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 A8MZ25 164 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 HOXB4P17483 251 aaPredicted RBP4.73□□□□□ -1.65
CLK3-212ENST00000563418 ESM1Q9NQ30 184 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 CRIP1P50238 77 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 CFHR3Q02985 330 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 CTSGP08311 255 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 TMEM254Q8TBM7 123 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 A0A1W2PRX2 142 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 PINLYPA6NC86 204 aa4.73□□□□□ -1.65
CLK3-212ENST00000563418 PIP4P2Q8N4L2 257 aa4.72□□□□□ -1.65
CLK3-212ENST00000563418 MUC7Q8TAX7 377 aa4.72□□□□□ -1.65
CLK3-212ENST00000563418 KLK9Q9UKQ9 250 aa4.72□□□□□ -1.65
CLK3-212ENST00000563418 DIRC1Q969H9 104 aa4.72□□□□□ -1.65
CLK3-212ENST00000563418 ABCA4P78363 2273 aa4.72□□□□□ -1.65
CLK3-212ENST00000563418 IGLV4-69A0A075B6H9 119 aa4.72□□□□□ -1.65
CLK3-212ENST00000563418 ATP6V0E1O15342 81 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms