RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 ZNF56Q15929 161 aa11.67□□□□□ -0.54
TPM1-226ENST00000560959 CLPSL2Q6UWE3 100 aa11.67□□□□□ -0.54
TPM1-226ENST00000560959 MARVELD1Q9BSK0 173 aa11.67□□□□□ -0.54
TPM1-226ENST00000560959 TRBV6-1A0A0K0K1D8 114 aa11.66□□□□□ -0.54
TPM1-226ENST00000560959 IQCJQ1A5X6 159 aa11.66□□□□□ -0.54
TPM1-226ENST00000560959 FMC1Q96HJ9 113 aa11.66□□□□□ -0.54
TPM1-226ENST00000560959 DERL1Q9BUN8 251 aa11.66□□□□□ -0.54
TPM1-226ENST00000560959 KIF25-AS1Q9Y6Z4 181 aa11.66□□□□□ -0.54
TPM1-226ENST00000560959 SSNA1O43805 119 aa11.65□□□□□ -0.54
TPM1-226ENST00000560959 GAGE6Q13070 117 aa11.65□□□□□ -0.54
TPM1-226ENST00000560959 IGLV10-54A0A075B6I4 117 aa11.64□□□□□ -0.55
TPM1-226ENST00000560959 TMSB15BA0A087X1C1 80 aa11.64□□□□□ -0.55
TPM1-226ENST00000560959 A0A1B0GUV1 79 aa11.64□□□□□ -0.55
TPM1-226ENST00000560959 GAS8-AS1O95177 125 aa11.64□□□□□ -0.55
TPM1-226ENST00000560959 PRR3P79522 188 aaKnown RBP11.64□□□□□ -0.55
TPM1-226ENST00000560959 SPINK6Q6UWN8 80 aa11.64□□□□□ -0.55
TPM1-226ENST00000560959 S100ZQ8WXG8 99 aa11.64□□□□□ -0.55
TPM1-226ENST00000560959 NDUFA13Q9P0J0 144 aa11.64□□□□□ -0.55
TPM1-226ENST00000560959 A6NHS1 94 aa11.63□□□□□ -0.55
TPM1-226ENST00000560959 FAM74A7A6NL05 159 aa11.63□□□□□ -0.55
TPM1-226ENST00000560959 CXCL1P09341 107 aa11.63□□□□□ -0.55
TPM1-226ENST00000560959 REG3GQ6UW15 175 aa11.63□□□□□ -0.55
TPM1-226ENST00000560959 ZNF471Q9BX82 626 aaPredicted RBP11.63□□□□□ -0.55
TPM1-226ENST00000560959 IGHV1-24A0A0C4DH33 117 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 LTAP01374 205 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 UBE2G2P60604 165 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 UBE2G1P62253 170 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 ODF1Q14990 250 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 C20orf203Q8NBC4 194 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 GTSF1Q8WW33 167 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 TCEAL7Q9BRU2 100 aa11.62□□□□□ -0.55
TPM1-226ENST00000560959 SSBP4Q9BWG4 385 aaPredicted RBP11.62□□□□□ -0.55
TPM1-226ENST00000560959 CTXND1A0A1B0GTU2 59 aa11.61□□□□□ -0.55
TPM1-226ENST00000560959 F5H697 171 aa11.61□□□□□ -0.55
TPM1-226ENST00000560959 SNAI2O43623 268 aa11.61□□□□□ -0.55
TPM1-226ENST00000560959 UPK1BO75841 260 aa11.61□□□□□ -0.55
TPM1-226ENST00000560959 OR10AG1Q8NH19 301 aa11.61□□□□□ -0.55
TPM1-226ENST00000560959 AQP10Q96PS8 301 aa11.61□□□□□ -0.55
TPM1-226ENST00000560959 NDUFS6O75380 124 aaKnown RBP11.6□□□□□ -0.55
TPM1-226ENST00000560959 COX6A2Q02221 97 aa11.6□□□□□ -0.55
TPM1-226ENST00000560959 ZNF726P1Q15940 193 aa11.6□□□□□ -0.55
TPM1-226ENST00000560959 OR5AL1P0C617 328 aa11.59□□□□□ -0.55
TPM1-226ENST00000560959 RPS10P46783 165 aaKnown RBP11.59□□□□□ -0.55
TPM1-226ENST00000560959 CFAP161Q6P656 301 aa11.59□□□□□ -0.55
TPM1-226ENST00000560959 FHITP49789 147 aa11.58□□□□□ -0.56
TPM1-226ENST00000560959 MAJINQ3KP22 176 aa11.58□□□□□ -0.56
TPM1-226ENST00000560959 SMIM17P0DL12 118 aa11.57□□□□□ -0.56
TPM1-226ENST00000560959 SRSF9Q13242 221 aaKnown RBP eCLIP11.57□□□□□ -0.56
TPM1-226ENST00000560959 SPANXN1Q5VSR9 72 aa11.57□□□□□ -0.56
TPM1-226ENST00000560959 IGLV4-60A0A075B6I1 120 aa11.56□□□□□ -0.56
TPM1-226ENST00000560959 IFITM3Q01628 133 aa11.56□□□□□ -0.56
TPM1-226ENST00000560959 STPG4Q8N801 248 aa11.56□□□□□ -0.56
TPM1-226ENST00000560959 PRSS3P2Q8NHM4 247 aa11.56□□□□□ -0.56
TPM1-226ENST00000560959 C15orf56Q8N910 161 aa11.55□□□□□ -0.56
TPM1-226ENST00000560959 TMEM243Q9BU79 118 aa11.55□□□□□ -0.56
TPM1-226ENST00000560959 H7C1H1 209 aa11.54□□□□□ -0.56
TPM1-226ENST00000560959 M0QY20 66 aa11.54□□□□□ -0.56
TPM1-226ENST00000560959 S100A9P06702 114 aaKnown RBP11.54□□□□□ -0.56
TPM1-226ENST00000560959 RAB5CP51148 216 aa11.54□□□□□ -0.56
TPM1-226ENST00000560959 GFRA4Q9GZZ7 299 aa11.54□□□□□ -0.56
TPM1-226ENST00000560959 LINC00474Q9P2X8 69 aa11.54□□□□□ -0.56
TPM1-226ENST00000560959 AP1S3Q96PC3 154 aa11.53□□□□□ -0.56
TPM1-226ENST00000560959 IGKV2-24A0A0C4DH68 120 aa11.52□□□□□ -0.57
TPM1-226ENST00000560959 AKR1C3P42330 323 aa11.52□□□□□ -0.57
TPM1-226ENST00000560959 LYPD6BQ8NI32 183 aa11.52□□□□□ -0.57
TPM1-226ENST00000560959 PGLYRP4Q96LB8 373 aa11.52□□□□□ -0.57
TPM1-226ENST00000560959 MLST8Q9BVC4 326 aa11.52□□□□□ -0.57
TPM1-226ENST00000560959 LPAP08519 4548 aa11.52□□□□□ -0.57
TPM1-226ENST00000560959 BORCS7-ASMTA0A0B4J1R7 106 aa11.51□□□□□ -0.57
TPM1-226ENST00000560959 MUC21A0A0G2JKD1 596 aa11.51□□□□□ -0.57
TPM1-226ENST00000560959 RPL7L1Q6DKI1 246 aaKnown RBP11.51□□□□□ -0.57
TPM1-226ENST00000560959 Q6ZRP5 223 aa11.51□□□□□ -0.57
TPM1-226ENST00000560959 PKIGQ9Y2B9 76 aa11.51□□□□□ -0.57
TPM1-226ENST00000560959 MUC21A0A140T8X8 626 aa11.5□□□□□ -0.57
TPM1-226ENST00000560959 SULT1A2P50226 295 aa11.5□□□□□ -0.57
TPM1-226ENST00000560959 AKR1C8PQ5T2L2 129 aa11.5□□□□□ -0.57
TPM1-226ENST00000560959 STOML3Q8TAV4 291 aa11.5□□□□□ -0.57
TPM1-226ENST00000560959 GAGE12HA6NDE8 117 aa11.49□□□□□ -0.57
TPM1-226ENST00000560959 CST9LP1Q5W188 147 aa11.49□□□□□ -0.57
TPM1-226ENST00000560959 A0A096LNI7 61 aa11.48□□□□□ -0.57
TPM1-226ENST00000560959 GVQW2A0A096LPI5 108 aaPredicted RBP11.48□□□□□ -0.57
TPM1-226ENST00000560959 MAP1LC3B2A6NCE7 125 aa11.48□□□□□ -0.57
TPM1-226ENST00000560959 UBE2L6O14933 153 aa11.48□□□□□ -0.57
TPM1-226ENST00000560959 DEFA1P59665 94 aa11.48□□□□□ -0.57
TPM1-226ENST00000560959 DEFA3P59666 94 aa11.48□□□□□ -0.57
TPM1-226ENST00000560959 INO80EQ8NBZ0 244 aaPredicted RBP11.48□□□□□ -0.57
TPM1-226ENST00000560959 MAP1LC3BQ9GZQ8 125 aa11.48□□□□□ -0.57
TPM1-226ENST00000560959 MED28Q9H204 178 aa11.48□□□□□ -0.57
TPM1-226ENST00000560959 SSTP61278 116 aa11.47□□□□□ -0.57
TPM1-226ENST00000560959 HIGD2BQ4VC39 106 aa11.47□□□□□ -0.57
TPM1-226ENST00000560959 BAGE2Q86Y30 109 aa11.47□□□□□ -0.57
TPM1-226ENST00000560959 NKX2-5P52952 324 aaPredicted RBP11.46□□□□□ -0.57
TPM1-226ENST00000560959 SUMO4Q6EEV6 95 aa11.46□□□□□ -0.57
TPM1-226ENST00000560959 RASL11AQ6T310 242 aa11.46□□□□□ -0.57
TPM1-226ENST00000560959 NIT2Q9NQR4 276 aa11.46□□□□□ -0.57
TPM1-226ENST00000560959 MUC2Q02817 5179 aa11.44□□□□□ -0.58
TPM1-226ENST00000560959 FAM231BA6NCW3 169 aa11.44□□□□□ -0.58
TPM1-226ENST00000560959 MGPP08493 103 aa11.44□□□□□ -0.58
TPM1-226ENST00000560959 CHCHD10Q8WYQ3 142 aaPredicted RBP11.44□□□□□ -0.58
TPM1-226ENST00000560959 PAGE4O60829 102 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms