RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 LINC01600Q96MT4 127 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 AMELXQ99217 191 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 HIST1H4GQ99525 98 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 TIMM17AQ99595 171 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 LITAFQ99732 161 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 PRADC1Q9BSG0 188 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 EDA2RQ9HAV5 297 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 TMEM160Q9NX00 188 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 CYSLTR1Q9Y271 337 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 HRNRQ86YZ3 2850 aaPredicted RBP1.81□□□□□ -2.12
SPG11-223ENST00000560858 ZNF292O60281 2723 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 PIEZO2Q9H5I5 2752 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 AKAP13Q12802 2813 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 SPTBN1Q01082 2364 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 GVINP1Q7Z2Y8 2422 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 CFAP47Q6ZTR5 3102 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 MAP1BP46821 2468 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 TTC28Q96AY4 2481 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 TLN1Q9Y490 2541 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 ZFHX4Q86UP3 3567 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3OR16-13A0A075B7E8 117 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-49A0A0A0MS15 119 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-74A0A0B4J1X5 117 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-66A0A0C4DH42 116 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 A0A0J9YX75 114 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 A0A0J9YY99 117 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 TRBV27A0A0K0K1C4 114 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 A0A1B0GV72 72 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 A6NDX4 124 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 IGIPA6NJ69 53 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 ZNF815PA8K554 130 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 LGALS9O00182 355 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 CIDEAO60543 219 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 DUSP14O95147 198 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 TSHBP01222 138 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 TRBV12-3P01733 135 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 IGHV1-69P01742 117 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 IGHG2P01859 326 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 MGPP08493 103 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 RNASE4P34096 147 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 TSPEAR-AS2P59090 65 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 HERVK_113P61574 105 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 RPL24P83731 157 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 WFDC2Q14508 124 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 PMVKQ15126 192 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 ZNF876PQ49A33 203 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 ZFP2Q6ZN57 461 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 RNF152Q8N8N0 203 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 DCANP1Q8TF63 244 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 DLX4Q92988 240 aaPredicted RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 PLEKHB2Q96CS7 222 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 TMEM141Q96I45 108 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 SCGB3A1Q96QR1 104 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 SPAG8Q99932 426 aaPredicted RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 BPESC1Q9GZL8 116 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 DAZ1Q9NQZ3 744 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 TP53TG1Q9Y2A0 90 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 ZNF256Q9Y2P7 627 aaPredicted RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 TSSC4Q9Y5U2 329 aaPredicted RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 MED13LQ71F56 2210 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.8□□□□□ -2.125e-6■■■■□ 22.8
SPG11-223ENST00000560858 PRRC2CQ9Y520 2896 aaKnown RBP1.8□□□□□ -2.12
SPG11-223ENST00000560858 DMXL1Q9Y485 3027 aa1.8□□□□□ -2.12
SPG11-223ENST00000560858 CR1P17927 2039 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 COL6A6A6NMZ7 2263 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 MUC6Q6W4X9 2439 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 MGAQ8IWI9 3026 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 TRBV20-1A0A075B6N2 111 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 A0A0B4J2C4 111 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-16A0A0C4DH30 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 TMEM89A2RUT3 159 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 SDHAF1A6NFY7 115 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 A8MTW9 85 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 K7EMT4 169 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 GAGE7O76087 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 APOMO95445 188 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-30P01768 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 GAGE12FP0CL80 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 GAGE12GP0CL81 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 GAGE12IP0CL82 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-30-5P0DP03 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 ZNF22P17026 224 aaPredicted RBP1.79□□□□□ -2.12
SPG11-223ENST00000560858 S100A4P26447 101 aaKnown RBP1.79□□□□□ -2.12
SPG11-223ENST00000560858 INSL3P51460 131 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 CRYBA4P53673 196 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 GAGE4Q13068 117 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 ETDBQ3ZM63 59 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 AMTNQ6UX39 209 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 TEN1Q86WV5 123 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 TMEM219Q86XT9 240 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 NDUFA11Q86Y39 141 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 C10orf126Q8N4M7 172 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 C14orf178Q8N769 122 aaPredicted RBP1.79□□□□□ -2.12
SPG11-223ENST00000560858 SLC25A29Q8N8R3 303 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 PPDPFLQ8WWR9 84 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 KIR2DL4Q99706 377 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 SIGMAR1Q99720 223 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 GTSF1LQ9H1H1 148 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 VCX2Q9H322 139 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 MRPL16Q9NX20 251 aaKnown RBP1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms