RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 BBC3Q96PG8 261 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-206ENST00000558338 SELENOKQ9Y6D0 94 aa5.38□□□□□ -1.55
VPS13C-206ENST00000558338 IGIPA6NJ69 53 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 FXYD2P54710 66 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 ZNF415Q09FC8 603 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 FAM74A4Q5TZK3 123 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 UFSP1Q6NVU6 142 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 DYNLRB2Q8TF09 96 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 PTH2Q96A98 100 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 MUC4Q99102 2169 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 PIEZO1Q92508 2521 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 M0QY20 66 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 CRYGDP07320 174 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 SLURP1P55000 103 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 HIST1H4GQ99525 98 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 LINC00467Q9BRT7 94 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 JPT2Q9H910 190 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 MDFICQ9P1T7 246 aa5.37□□□□□ -1.55
VPS13C-206ENST00000558338 SPTAN1Q13813 2472 aaKnown RBP5.36□□□□□ -1.55
VPS13C-206ENST00000558338 GAGE12BA1L429 117 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 C11orf86A6NJI1 115 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 A8MWV9 139 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 I3L3M4 83 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 DEFB131AP59861 70 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 ZNF876PQ49A33 203 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 NEGR1Q7Z3B1 354 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 MAPKAPK5-AS1Q8N8E1 139 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 RAB37Q96AX2 223 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 PRADC1Q9BSG0 188 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 TTTY13Q9BZ97 58 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 CST9LQ9H4G1 147 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 SPCS1Q9Y6A9 102 aa5.36□□□□□ -1.55
VPS13C-206ENST00000558338 TRBV7-3A0A075B6L6 115 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 ZNF815PA8K554 130 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 H3BMM0 161 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 K7ERU9 68 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 M0R2P5 195 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 RHODO00212 210 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 KRTAP10-9P60411 292 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 SHISA2Q6UWI4 295 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 DUX3Q96PT4 197 aa5.35□□□□□ -1.55
VPS13C-206ENST00000558338 NHP2Q9NX24 153 aaKnown RBP5.35□□□□□ -1.55
VPS13C-206ENST00000558338 ASH1LQ9NR48 2969 aaKnown RBP5.35□□□□□ -1.55
VPS13C-206ENST00000558338 IGLV4-69A0A075B6H9 119 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 KNCNA6PVL3 124 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 TSHBP01222 138 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 INSP01308 110 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 DEFB136Q30KP8 78 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 SCGB1D4Q6XE38 83 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 NFE4Q86UQ8 179 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 KLHL30-AS1Q8NEE0 82 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 MAP6D1Q9H9H5 199 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 FAM30AQ9NZY2 134 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 A0A1B0GWB2 263 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 CRYBA4P53673 196 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 SEC61GP60059 68 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 OCIAD2Q56VL3 154 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 MORN3Q6PF18 240 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-206ENST00000558338 STHQ8IWL8 128 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 TMEM61Q8N0U2 210 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 C20orf203Q8NBC4 194 aa5.34□□□□□ -1.55
VPS13C-206ENST00000558338 PHLDA1Q8WV24 401 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-206ENST00000558338 IGSF10Q6WRI0 2623 aa5.34□□□□□ -1.56
VPS13C-206ENST00000558338 RPL39P62891 51 aaKnown RBP5.33□□□□□ -1.56
VPS13C-206ENST00000558338 DEFB114Q30KQ6 69 aa5.33□□□□□ -1.56
VPS13C-206ENST00000558338 C12orf74Q32Q52 190 aa5.33□□□□□ -1.56
VPS13C-206ENST00000558338 C18orf65Q6ZTR6 163 aa5.33□□□□□ -1.56
VPS13C-206ENST00000558338 DNAJC30Q96LL9 226 aa5.33□□□□□ -1.56
VPS13C-206ENST00000558338 PYGO1Q9Y3Y4 419 aa5.33□□□□□ -1.56
VPS13C-206ENST00000558338 CFAP46Q8IYW2 2715 aa5.33□□□□□ -1.56
VPS13C-206ENST00000558338 DNAJC9-AS1A6NH13 148 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 RBMY1A1P0DJD3 496 aaKnown RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 RBMY1CP0DJD4 496 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 CMC4P56277 68 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 RBX1P62877 108 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 RBMY1FQ15415 496 aaKnown RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 CD300EQ496F6 205 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 TMEM170BQ5T4T1 132 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 LYRM7Q5U5X0 104 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 Q6ZSV7 163 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 DLX4Q92988 240 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 KRTAP4-11Q9BYQ6 195 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 KRTAP4-5Q9BYR2 181 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 SPANXB1Q9NS25 103 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 TNFRSF18Q9Y5U5 241 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 ANKRD17O75179 2603 aaKnown RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 VPS13CQ709C8 3753 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 USP9XQ93008 2570 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 ZFHX3Q15911 3703 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 IGLL5B9A064 214 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 K7ERJ3 54 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 PAX4O43316 350 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 LGALS3P17931 250 aaKnown RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 LINC01587Q99440 93 aa5.32□□□□□ -1.56
VPS13C-206ENST00000558338 NAA38Q9BRA0 125 aaKnown RBP5.32□□□□□ -1.56
VPS13C-206ENST00000558338 SVEP1Q4LDE5 3571 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 RBMY1BA6NDE4 496 aaKnown RBP5.31□□□□□ -1.56
VPS13C-206ENST00000558338 RBMY1EA6NEQ0 496 aaKnown RBP5.31□□□□□ -1.56
VPS13C-206ENST00000558338 LEPROTO15243 131 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 RBMY1DP0C7P1 496 aaKnown RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms