RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 LINC01549A6NIU2 74 aa12.29□□□□□ -0.44
LDLR-206ENST00000557958 H7C1H1 209 aa12.29□□□□□ -0.44
LDLR-206ENST00000557958 CRYGDP07320 174 aa12.29□□□□□ -0.44
LDLR-206ENST00000557958 C1QTNF4Q9BXJ3 329 aa12.29□□□□□ -0.44
LDLR-206ENST00000557958 CSTL1Q9H114 145 aa12.29□□□□□ -0.44
LDLR-206ENST00000557958 UBE2V1Q13404 147 aa12.28□□□□□ -0.44
LDLR-206ENST00000557958 TRBV6-5A0A0K0K1A5 114 aa12.27□□□□□ -0.44
LDLR-206ENST00000557958 VCYO14598 125 aa12.27□□□□□ -0.44
LDLR-206ENST00000557958 MORN3Q6PF18 240 aaPredicted RBP12.27□□□□□ -0.44
LDLR-206ENST00000557958 C18orf15Q96N68 181 aa12.27□□□□□ -0.44
LDLR-206ENST00000557958 KIR2DL4Q99706 377 aa12.27□□□□□ -0.44
LDLR-206ENST00000557958 hDV102S1A0JD36 115 aa12.27□□□□□ -0.45
LDLR-206ENST00000557958 PMCHL2Q9BQD1 86 aa12.27□□□□□ -0.45
LDLR-206ENST00000557958 CBY1Q9Y3M2 126 aa12.27□□□□□ -0.45
LDLR-206ENST00000557958 RHODO00212 210 aa12.26□□□□□ -0.45
LDLR-206ENST00000557958 PRSS1P07477 247 aa12.26□□□□□ -0.45
LDLR-206ENST00000557958 PTTG1IPP53801 180 aa12.26□□□□□ -0.45
LDLR-206ENST00000557958 C9orf66Q5T8R8 295 aa12.26□□□□□ -0.45
LDLR-206ENST00000557958 C11orf72Q8NBR9 251 aa12.26□□□□□ -0.45
LDLR-206ENST00000557958 M0QY20 66 aa12.25□□□□□ -0.45
LDLR-206ENST00000557958 CCL25O15444 150 aa12.25□□□□□ -0.45
LDLR-206ENST00000557958 GTSCR1Q86UQ5 136 aa12.25□□□□□ -0.45
LDLR-206ENST00000557958 EDA2RQ9HAV5 297 aa12.25□□□□□ -0.45
LDLR-206ENST00000557958 C19orf73Q9NVV2 129 aa12.25□□□□□ -0.45
LDLR-206ENST00000557958 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.25□□□□□ -0.45
LDLR-206ENST00000557958 C1orf158Q8N1D5 194 aa12.25□□□□□ -0.45
LDLR-206ENST00000557958 IGHV3OR16-12A0A075B7B8 117 aa12.24□□□□□ -0.45
LDLR-206ENST00000557958 SDHAF1A6NFY7 115 aa12.24□□□□□ -0.45
LDLR-206ENST00000557958 POLR2KP53803 58 aaKnown RBP12.24□□□□□ -0.45
LDLR-206ENST00000557958 BVES-AS1Q5T3Y7 98 aa12.24□□□□□ -0.45
LDLR-206ENST00000557958 TOMM6Q96B49 74 aa12.24□□□□□ -0.45
LDLR-206ENST00000557958 MCRIP2Q9BUT9 160 aaKnown RBP12.24□□□□□ -0.45
LDLR-206ENST00000557958 TRBV27A0A0K0K1C4 114 aa12.23□□□□□ -0.45
LDLR-206ENST00000557958 MPV17L2Q567V2 206 aa12.23□□□□□ -0.45
LDLR-206ENST00000557958 TMEM263Q8WUH6 116 aaKnown RBP12.23□□□□□ -0.45
LDLR-206ENST00000557958 COX8AP10176 69 aa12.23□□□□□ -0.45
LDLR-206ENST00000557958 K7EP13 123 aa12.22□□□□□ -0.45
LDLR-206ENST00000557958 C2orf66Q6UXQ4 117 aa12.22□□□□□ -0.45
LDLR-206ENST00000557958 SCGB3A1Q96QR1 104 aa12.22□□□□□ -0.45
LDLR-206ENST00000557958 RPL35AP18077 110 aaKnown RBP12.21□□□□□ -0.45
LDLR-206ENST00000557958 MDFIQ99750 246 aa12.21□□□□□ -0.45
LDLR-206ENST00000557958 CYSLTR1Q9Y271 337 aa12.21□□□□□ -0.45
LDLR-206ENST00000557958 TAX1BP3O14907 124 aa12.21□□□□□ -0.46
LDLR-206ENST00000557958 WFDC9Q8NEX5 89 aa12.21□□□□□ -0.46
LDLR-206ENST00000557958 RNASE8Q8TDE3 154 aaKnown RBP12.21□□□□□ -0.46
LDLR-206ENST00000557958 WFDC10AQ9H1F0 79 aa12.21□□□□□ -0.46
LDLR-206ENST00000557958 TP73-AS1Q9UF72 201 aa12.21□□□□□ -0.46
LDLR-206ENST00000557958 PRM2P04554 102 aa12.2□□□□□ -0.46
LDLR-206ENST00000557958 ODF1Q14990 250 aa12.2□□□□□ -0.46
LDLR-206ENST00000557958 CFAP126Q5VTH2 177 aa12.2□□□□□ -0.46
LDLR-206ENST00000557958 Q6ZVH6 145 aa12.2□□□□□ -0.46
LDLR-206ENST00000557958 C16orf74Q96GX8 76 aa12.2□□□□□ -0.46
LDLR-206ENST00000557958 MRPL16Q9NX20 251 aaKnown RBP12.2□□□□□ -0.46
LDLR-206ENST00000557958 RHOHQ15669 191 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 UFSP1Q6NVU6 142 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 ZFP2Q6ZN57 461 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 ERASQ7Z444 233 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 IL17DQ8TAD2 202 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 TRAV12-1A0A0B4J245 112 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 I3L3M4 83 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 AZU1P20160 251 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 NEGR1Q7Z3B1 354 aa12.19□□□□□ -0.46
LDLR-206ENST00000557958 RS1O15537 224 aa12.18□□□□□ -0.46
LDLR-206ENST00000557958 DPM2O94777 84 aa12.18□□□□□ -0.46
LDLR-206ENST00000557958 GIG44P09565 113 aaPredicted RBP12.18□□□□□ -0.46
LDLR-206ENST00000557958 C2orf91Q6ZV80 131 aa12.18□□□□□ -0.46
LDLR-206ENST00000557958 TNFRSF18Q9Y5U5 241 aa12.18□□□□□ -0.46
LDLR-206ENST00000557958 A0A087WX48 190 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 IGHV3-73A0A0B4J1V6 119 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 IGKCP01834 107 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 RIPPLY3P57055 190 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 OXLD1Q5BKU9 147 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 DKK2Q9UBU2 259 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 TRGV1A0A0A0MS02 117 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 PLNP26678 52 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 OR4C5Q8NGB2 326 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 ZMAT4Q9H898 229 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 TP53TG1Q9Y2A0 90 aa12.17□□□□□ -0.46
LDLR-206ENST00000557958 IGHV3-53P01767 116 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 FGF6P10767 208 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 SEC11AP67812 179 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 DAZ2Q13117 558 aaKnown RBP12.16□□□□□ -0.46
LDLR-206ENST00000557958 VAMP3Q15836 100 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 RRN3P1Q2M238 152 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 TMEM141Q96I45 108 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 DNAJC30Q96LL9 226 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 VWFP04275 2813 aa12.16□□□□□ -0.46
LDLR-206ENST00000557958 CSNK1G2-AS1Q8NCQ2 148 aa12.14□□□□□ -0.47
LDLR-206ENST00000557958 TIMM17AQ99595 171 aa12.14□□□□□ -0.47
LDLR-206ENST00000557958 TRRAPQ9Y4A5 3859 aa12.14□□□□□ -0.47
LDLR-206ENST00000557958 F8VRH5 84 aa12.13□□□□□ -0.47
LDLR-206ENST00000557958 ANKRD39Q53RE8 183 aa12.13□□□□□ -0.47
LDLR-206ENST00000557958 NEXN-AS1Q8NBZ9 246 aa12.13□□□□□ -0.47
LDLR-206ENST00000557958 MRPL35Q9NZE8 188 aaKnown RBP12.13□□□□□ -0.47
LDLR-206ENST00000557958 TRAV4A0A0B4J268 109 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 CIDEAO60543 219 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 TSHBP01222 138 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 RBX1P62877 108 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 BOD1L2Q8IYS8 172 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 STAB1Q9NY15 2570 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms