RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 TRBV6-8A0A0A6YYG3 113 aa7.25□□□□□ -1.25
CCDC88C-213ENST00000557455 RPL19P84098 196 aaKnown RBP7.25□□□□□ -1.25
CCDC88C-213ENST00000557455 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.25□□□□□ -1.25
CCDC88C-213ENST00000557455 NEXN-AS1Q8NBZ9 246 aa7.25□□□□□ -1.25
CCDC88C-213ENST00000557455 C1orf43Q9BWL3 253 aa7.25□□□□□ -1.25
CCDC88C-213ENST00000557455 A0A1B0GV50 99 aa7.24□□□□□ -1.25
CCDC88C-213ENST00000557455 CRPP02741 224 aa7.24□□□□□ -1.25
CCDC88C-213ENST00000557455 CXCL1P09341 107 aa7.24□□□□□ -1.25
CCDC88C-213ENST00000557455 C14orf177Q52M58 125 aa7.24□□□□□ -1.25
CCDC88C-213ENST00000557455 OR10AG1Q8NH19 301 aa7.24□□□□□ -1.25
CCDC88C-213ENST00000557455 SFT2D1Q8WV19 159 aa7.24□□□□□ -1.25
CCDC88C-213ENST00000557455 CHAC1Q9BUX1 264 aa7.24□□□□□ -1.25
CCDC88C-213ENST00000557455 SCO2A0A1W2PP80 73 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 KRTAP29-1A8MX34 341 aaPredicted RBP7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 UMAD1C9J7I0 102 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 F5H697 171 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 SULT1A2P50226 295 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 RAB5CP51148 216 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 BLOC1S1P78537 153 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 MPV17L2Q567V2 206 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 SPANXN1Q5VSR9 72 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 PRR27Q6MZM9 219 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 ENHOQ6UWT2 76 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 BAGE2Q86Y30 109 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 C15orf54Q8N8G6 183 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 FAM213BQ8TBF2 198 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 MBD3L1Q8WWY6 194 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 MLST8Q9BVC4 326 aa7.23□□□□□ -1.25
CCDC88C-213ENST00000557455 MUC21A0A0G2JKD1 596 aa7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 MUC21A0A140T8X8 626 aa7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 SNAI2O43623 268 aa7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 ANGP03950 147 aaKnown RBP7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 OR5AL1P0C617 328 aa7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 PKIAP61925 76 aa7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 CIRBP-AS1Q8TBR5 109 aa7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 CHCHD5Q9BSY4 110 aa7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 SSBP4Q9BWG4 385 aaPredicted RBP7.22□□□□□ -1.25
CCDC88C-213ENST00000557455 LRP1Q07954 4544 aaKnown RBP7.21□□□□□ -1.26
CCDC88C-213ENST00000557455 RAB19A4D1S5 217 aa7.21□□□□□ -1.26
CCDC88C-213ENST00000557455 TEX46H3BTG2 121 aa7.21□□□□□ -1.26
CCDC88C-213ENST00000557455 SMIM17P0DL12 118 aa7.21□□□□□ -1.26
CCDC88C-213ENST00000557455 SSTP61278 116 aa7.21□□□□□ -1.26
CCDC88C-213ENST00000557455 TMEM97Q5BJF2 176 aa7.21□□□□□ -1.26
CCDC88C-213ENST00000557455 UQCC3Q6UW78 93 aa7.21□□□□□ -1.26
CCDC88C-213ENST00000557455 HLA-DQA1P01909 254 aa7.2□□□□□ -1.26
CCDC88C-213ENST00000557455 H2AFB1P0C5Y9 115 aa7.2□□□□□ -1.26
CCDC88C-213ENST00000557455 MIAQ16674 131 aa7.2□□□□□ -1.26
CCDC88C-213ENST00000557455 FAT3Q8TDW7 4589 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 USP17L23D6RBM5 183 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 IGLV2-8P01709 118 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 RPL35P42766 123 aaKnown RBP7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 NTM-AS1Q6ZSK4 140 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 AP1S3Q96PC3 154 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 DERL1Q9BUN8 251 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 VAX2Q9UIW0 290 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 KIF25-AS1Q9Y6Z4 181 aa7.19□□□□□ -1.26
CCDC88C-213ENST00000557455 TRBV25-1A0A075B6N4 114 aa7.18□□□□□ -1.26
CCDC88C-213ENST00000557455 KRTAP10-4P60372 401 aaPredicted RBP7.18□□□□□ -1.26
CCDC88C-213ENST00000557455 GAGE6Q13070 117 aa7.18□□□□□ -1.26
CCDC88C-213ENST00000557455 CLPSL2Q6UWE3 100 aa7.18□□□□□ -1.26
CCDC88C-213ENST00000557455 MGPP08493 103 aa7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 RBX1P62877 108 aa7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 DGAT2L7PQ6IED9 249 aa7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 LINC00269Q8N2A0 174 aa7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 DAZAP1Q96EP5 407 aaKnown RBP7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 TPPP3Q9BW30 176 aa7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 MANBALQ9NQG1 85 aa7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 PRR34Q9NV39 138 aa7.17□□□□□ -1.26
CCDC88C-213ENST00000557455 IGHV1-24A0A0C4DH33 117 aa7.16□□□□□ -1.26
CCDC88C-213ENST00000557455 H7C1H1 209 aa7.16□□□□□ -1.26
CCDC88C-213ENST00000557455 PRSS1P07477 247 aa7.16□□□□□ -1.26
CCDC88C-213ENST00000557455 GZMBP10144 247 aa7.16□□□□□ -1.26
CCDC88C-213ENST00000557455 IQCJQ1A5X6 159 aa7.16□□□□□ -1.26
CCDC88C-213ENST00000557455 GNG13Q9P2W3 67 aa7.16□□□□□ -1.26
CCDC88C-213ENST00000557455 PKHD1L1Q86WI1 4243 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 M0QY20 66 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 OXTP01178 125 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 IGLC6P0CF74 106 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 RPS20P60866 119 aaKnown RBP7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 RPL37AP61513 92 aaKnown RBP7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 CCL20P78556 96 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 CENPWQ5EE01 88 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 SERTAD4-AS1Q5TG53 156 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 C9orf163Q8N9P6 203 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 FER1L6-AS1Q8NA97 138 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 OR2D3Q8NGH3 330 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 LYPD6BQ8NI32 183 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 C11orf52Q96A22 123 aa7.15□□□□□ -1.26
CCDC88C-213ENST00000557455 GNG4P50150 75 aa7.14□□□□□ -1.27
CCDC88C-213ENST00000557455 CACNG7P62955 275 aa7.14□□□□□ -1.27
CCDC88C-213ENST00000557455 REG3AQ06141 175 aa7.14□□□□□ -1.27
CCDC88C-213ENST00000557455 SUMO4Q6EEV6 95 aa7.14□□□□□ -1.27
CCDC88C-213ENST00000557455 KRTAP26-1Q6PEX3 210 aa7.14□□□□□ -1.27
CCDC88C-213ENST00000557455 CLRN3Q8NCR9 226 aa7.14□□□□□ -1.27
CCDC88C-213ENST00000557455 IGLV10-54A0A075B6I4 117 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 TRAV1-1A0A0B4J248 108 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 TMEM218A2RU14 115 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 XKRY2A2RUG3 117 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 C19orf71A6NCJ1 209 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 F2Z2F3 143 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms