RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 TMEM70Q9BUB7 260 aa8.88□□□□□ -0.99
SHMT2-214ENST00000554604 VAMP8Q9BV40 100 aa8.88□□□□□ -0.99
SHMT2-214ENST00000554604 PHLDA3Q9Y5J5 127 aa8.88□□□□□ -0.99
SHMT2-214ENST00000554604 TRAV12-3A0A0B4J271 114 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 TEX48A0A1B0GUV7 120 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 GNRH2O43555 120 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 TNFRSF6BO95407 300 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 NCR2O95944 276 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 INSP01308 110 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 SPINK13Q1W4C9 94 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 C1orf158Q8N1D5 194 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 DPH3P1Q9H4G8 78 aa8.87□□□□□ -0.99
SHMT2-214ENST00000554604 NXT2Q9NPJ8 142 aaKnown RBP8.87□□□□□ -0.99
SHMT2-214ENST00000554604 LOC389332A0A1B0GUA5 103 aa8.86□□□□□ -0.99
SHMT2-214ENST00000554604 SYS1-DBNDD2H3BUS1 97 aa8.86□□□□□ -0.99
SHMT2-214ENST00000554604 PET117Q6UWS5 81 aa8.86□□□□□ -0.99
SHMT2-214ENST00000554604 MAP1LC3CQ9BXW4 147 aa8.86□□□□□ -0.99
SHMT2-214ENST00000554604 APLNQ9ULZ1 77 aa8.86□□□□□ -0.99
SHMT2-214ENST00000554604 MUC4Q99102 2169 aa8.86□□□□□ -0.99
SHMT2-214ENST00000554604 IGHV1OR15-1A0A075B7D0 117 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 A0A096LNJ9 63 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 C20orf202A1L168 122 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 M0R381 172 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 HBDP02042 147 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 FAM222AQ5U5X8 452 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 POM121L12Q8N7R1 296 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 NRACQ8N912 160 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 C9orf85Q96MD7 179 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 AP1S3Q96PC3 154 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 DKK2Q9UBU2 259 aa8.85□□□□□ -0.99
SHMT2-214ENST00000554604 TIMM8BQ9Y5J9 83 aaPredicted RBP8.85□□□□□ -0.99
SHMT2-214ENST00000554604 TRAV12-2A0A075B6T6 113 aa8.84□□□□□ -0.99
SHMT2-214ENST00000554604 LINC00173Q6ZV60 143 aa8.84□□□□□ -0.99
SHMT2-214ENST00000554604 SPATA12Q7Z6I5 190 aa8.84□□□□□ -0.99
SHMT2-214ENST00000554604 Q8N8P6 123 aa8.84□□□□□ -0.99
SHMT2-214ENST00000554604 NDUFAF3Q9BU61 184 aa8.84□□□□□ -0.99
SHMT2-214ENST00000554604 KMT2AQ03164 3969 aa8.84□□□□□ -0.99
SHMT2-214ENST00000554604 IGLV2-18A0A075B6J9 118 aa8.83□□□□□ -1
SHMT2-214ENST00000554604 IGHV3-16A0A0C4DH30 117 aa8.83□□□□□ -1
SHMT2-214ENST00000554604 GAS8-AS1O95177 125 aa8.83□□□□□ -1
SHMT2-214ENST00000554604 PRM2P04554 102 aa8.83□□□□□ -1
SHMT2-214ENST00000554604 HTN3P15516 51 aa8.83□□□□□ -1
SHMT2-214ENST00000554604 PAM16Q9Y3D7 125 aa8.83□□□□□ -1
SHMT2-214ENST00000554604 TRGV11A0A075B6L2 103 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 TRAV9-2A0A087WT02 112 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 PPP1R17O96001 155 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 HTN1P15515 57 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 GATA1P15976 413 aaPredicted RBP8.82□□□□□ -1
SHMT2-214ENST00000554604 DAD1P61803 113 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 CTAG1AP78358 180 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 SPATA45Q537H7 98 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 LINC01545Q5VT33 79 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 SYT8Q8NBV8 401 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 LINC01587Q99440 93 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 C20orf78Q9BR46 151 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 KIF25-AS1Q9Y6Z4 181 aa8.82□□□□□ -1
SHMT2-214ENST00000554604 FCER1GP30273 86 aa8.81□□□□□ -1
SHMT2-214ENST00000554604 C14orf178Q8N769 122 aaPredicted RBP8.81□□□□□ -1
SHMT2-214ENST00000554604 C14orf144Q96I85 54 aa8.81□□□□□ -1
SHMT2-214ENST00000554604 MIEN1Q9BRT3 115 aa8.81□□□□□ -1
SHMT2-214ENST00000554604 LINC00467Q9BRT7 94 aa8.81□□□□□ -1
SHMT2-214ENST00000554604 TRAV26-2A0A0B4J265 109 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 K7EMI3 77 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 SMIM17P0DL12 118 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 P0DMU3 169 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 FAM231AP0DMU4 169 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 FAM231CP0DMU5 169 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 LINC00315P59091 139 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 SMIM2Q9BVW6 85 aa8.8□□□□□ -1
SHMT2-214ENST00000554604 LYRM9A8MSI8 78 aa8.79□□□□□ -1
SHMT2-214ENST00000554604 MGPP08493 103 aa8.79□□□□□ -1
SHMT2-214ENST00000554604 RPL32P62910 135 aaKnown RBP8.79□□□□□ -1
SHMT2-214ENST00000554604 MRPL52Q86TS9 123 aaKnown RBP8.79□□□□□ -1
SHMT2-214ENST00000554604 RASL10AQ92737 203 aa8.79□□□□□ -1
SHMT2-214ENST00000554604 IFI27L1Q96BM0 104 aa8.79□□□□□ -1
SHMT2-214ENST00000554604 MDFICQ9P1T7 246 aa8.79□□□□□ -1
SHMT2-214ENST00000554604 EPPK1P58107 5090 aaKnown RBP8.78□□□□□ -1
SHMT2-214ENST00000554604 IGLC3P0DOY3 106 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 DEFB130BP0DP73 79 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 DEFB130AP0DP74 79 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 AZU1P20160 251 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 SUMO2P61956 95 aaKnown RBP8.78□□□□□ -1
SHMT2-214ENST00000554604 LAGE3Q14657 143 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 LGALS9BQ3B8N2 356 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 ATOH7Q8N100 152 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 PTH2Q96A98 100 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 C16orf74Q96GX8 76 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 UQCR10Q9UDW1 63 aa8.78□□□□□ -1
SHMT2-214ENST00000554604 CBY3A6NI87 242 aa8.77□□□□□ -1.01
SHMT2-214ENST00000554604 PIK3CD-AS1Q5SR53 167 aa8.77□□□□□ -1.01
SHMT2-214ENST00000554604 UBE2DNLQ8IWF7 75 aa8.77□□□□□ -1.01
SHMT2-214ENST00000554604 VPS13DQ5THJ4 4388 aa8.76□□□□□ -1.01
SHMT2-214ENST00000554604 FRAS1Q86XX4 4008 aa8.76□□□□□ -1.01
SHMT2-214ENST00000554604 ZNF415Q09FC8 603 aa8.76□□□□□ -1.01
SHMT2-214ENST00000554604 ORMDL2Q53FV1 153 aa8.76□□□□□ -1.01
SHMT2-214ENST00000554604 LBHQ53QV2 105 aaPredicted RBP8.76□□□□□ -1.01
SHMT2-214ENST00000554604 TMEM263Q8WUH6 116 aaKnown RBP8.76□□□□□ -1.01
SHMT2-214ENST00000554604 RPL39LQ96EH5 51 aaKnown RBP8.76□□□□□ -1.01
SHMT2-214ENST00000554604 ST20Q9HBF5 79 aa8.76□□□□□ -1.01
SHMT2-214ENST00000554604 TRBV6-5A0A0K0K1A5 114 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms