RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 BBC3Q96PG8 261 aaPredicted RBP9.2□□□□□ -0.94
SHMT2-207ENST00000553837 FBN2P35556 2912 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 C9JAW5 83 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 DUSP14O95147 198 aaKnown RBP9.2□□□□□ -0.94
SHMT2-207ENST00000553837 TGFAP01135 160 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 MSMBP08118 114 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 C9orf47Q6ZRZ4 202 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 LINC00694P0DN24 101 aa9.19□□□□□ -0.94
SHMT2-207ENST00000553837 MRPL53Q96EL3 112 aaKnown RBP9.19□□□□□ -0.94
SHMT2-207ENST00000553837 C16orf92Q96LL3 132 aa9.19□□□□□ -0.94
SHMT2-207ENST00000553837 LINC01600Q96MT4 127 aa9.19□□□□□ -0.94
SHMT2-207ENST00000553837 CHD6Q8TD26 2715 aa9.18□□□□□ -0.94
SHMT2-207ENST00000553837 SOCS3O14543 225 aa9.18□□□□□ -0.94
SHMT2-207ENST00000553837 EDN2P20800 178 aa9.18□□□□□ -0.94
SHMT2-207ENST00000553837 M0R2P5 195 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 PPP1R17O96001 155 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 C15orf53Q8NAA6 179 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 ZANQ9Y493 2812 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 C11orf86A6NJI1 115 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 M0R381 172 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 NDUFA4O00483 81 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 P0DMU3 169 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 FAM231AP0DMU4 169 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 FAM231CP0DMU5 169 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 FAM19A5Q7Z5A7 132 aaPredicted RBP9.17□□□□□ -0.94
SHMT2-207ENST00000553837 Q8N1Y9 231 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 DPH3P1Q9H4G8 78 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 MYO18BQ8IUG5 2567 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.17□□□□□ -0.942e-7■■■■□ 26
SHMT2-207ENST00000553837 CSPG4Q6UVK1 2322 aa9.17□□□□□ -0.94
SHMT2-207ENST00000553837 TRAV8-4A0A0B4J246 113 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 SPRY2O43597 315 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 NDUFA7O95182 113 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 IGLV1-40P01703 118 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 CRYGDP07320 174 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 RPL13AP40429 203 aaKnown RBP9.16□□□□□ -0.94
SHMT2-207ENST00000553837 ODF3Q96PU9 254 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 IGLV4-69A0A075B6H9 119 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 PRB1P04280 392 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 CFHR3Q02985 330 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 ATXN8Q156A1 80 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 C9orf139Q6ZV77 190 aa9.16□□□□□ -0.94
SHMT2-207ENST00000553837 TRPT1Q86TN4 253 aaKnown RBP9.16□□□□□ -0.94
SHMT2-207ENST00000553837 RPL39LQ96EH5 51 aaKnown RBP9.16□□□□□ -0.94
SHMT2-207ENST00000553837 ZFYVE26Q68DK2 2539 aa9.15□□□□□ -0.94
SHMT2-207ENST00000553837 TRBV7-7A0A0K0K1E9 115 aa9.15□□□□□ -0.94
SHMT2-207ENST00000553837 F6UB75 175 aa9.15□□□□□ -0.94
SHMT2-207ENST00000553837 PMVKQ15126 192 aa9.15□□□□□ -0.94
SHMT2-207ENST00000553837 ZFAND2AQ8N6M9 145 aa9.15□□□□□ -0.94
SHMT2-207ENST00000553837 MRAPQ8TCY5 172 aa9.15□□□□□ -0.94
SHMT2-207ENST00000553837 NTN5Q8WTR8 489 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-207ENST00000553837 USMG5Q96IX5 58 aa9.15□□□□□ -0.94
SHMT2-207ENST00000553837 IGKV3-7A0A075B6H7 116 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 TRAV2A0A0B4J234 112 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 IGHV3-33P01772 117 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 C10orf99Q6UWK7 81 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 ZNF843Q8N446 348 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 MAPK1IP1LQ8NDC0 245 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 POLQO75417 2590 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 B4DSR2 109 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 H3BUA1 57 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 TMEM141Q96I45 108 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 TMEM101Q96IK0 257 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 IMUPQ9GZP8 106 aa9.14□□□□□ -0.95
SHMT2-207ENST00000553837 A0A096LNT2 108 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 A0A0B4J2C4 111 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 FAM240AA0A1B0GVK7 77 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 RNF223E7ERA6 249 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 IGHV4-59P01825 116 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 C9orf153Q5TBE3 101 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 C3orf22Q8N5N4 141 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 C14orf178Q8N769 122 aaPredicted RBP9.13□□□□□ -0.95
SHMT2-207ENST00000553837 TMEM263Q8WUH6 116 aaKnown RBP9.13□□□□□ -0.95
SHMT2-207ENST00000553837 FAM208BQ5VWN6 2430 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 UQCRQO14949 82 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 ATP5G1P05496 136 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 MGPP08493 103 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 LGALS3P17931 250 aaKnown RBP9.13□□□□□ -0.95
SHMT2-207ENST00000553837 DEFB112Q30KQ8 113 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 LINC01620Q4KN68 170 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 TMEM170BQ5T4T1 132 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 RHPN1-AS1Q9BWJ2 59 aa9.13□□□□□ -0.95
SHMT2-207ENST00000553837 USP9YO00507 2555 aaPredicted RBP9.12□□□□□ -0.95
SHMT2-207ENST00000553837 CENPEQ02224 2701 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 IGIPA6NJ69 53 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 J3QQQ9 107 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 TSHBP01222 138 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 S100A4P26447 101 aaKnown RBP9.12□□□□□ -0.95
SHMT2-207ENST00000553837 TSPEAR-AS2P59090 65 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 RPL11P62913 178 aaKnown RBP9.12□□□□□ -0.95
SHMT2-207ENST00000553837 ZNRF2Q8NHG8 242 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 FAM19A4Q96LR4 140 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 PHLDA3Q9Y5J5 127 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 LENEPQ9Y5L5 61 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.12□□□□□ -0.95
SHMT2-207ENST00000553837 TRBV10-2A0A0K0K1G8 114 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 LOC107984640A0A0U1RRK4 108 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 EMP1P54849 157 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 LINC00477Q96M19 166 aa9.12□□□□□ -0.95
SHMT2-207ENST00000553837 CHCHD5Q9BSY4 110 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms