RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HTN1P15515 57 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 HIST2H2BDQ6DRA6 164 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 C9orf85Q96MD7 179 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 SPAG8Q99932 426 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-213ENST00000552720 TSSC4Q9Y5U2 329 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-213ENST00000552720 SETD2Q9BYW2 2564 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-213ENST00000552720 IGHV3-64A0A075B6Q5 118 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 TRBV27A0A0K0K1C4 114 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 B4DSR2 109 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 TMEM238C9JI98 176 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 M0QY20 66 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 LGALS9O00182 355 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 RBMY1A1P0DJD3 496 aaKnown RBP5.54□□□□□ -1.52
LIMA1-213ENST00000552720 RBMY1CP0DJD4 496 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 P0DMU3 169 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 FAM231AP0DMU4 169 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 FAM231CP0DMU5 169 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 RBMY1FQ15415 496 aaKnown RBP5.54□□□□□ -1.52
LIMA1-213ENST00000552720 GAGE13Q4V321 117 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 GTSF1LQ9H1H1 148 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 IGHV3-73A0A0B4J1V6 119 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 K7EQG2 157 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 TSPAN13O95857 204 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 UBE2D1P51668 147 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 PROK1P58294 105 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 ZNF580Q9UK33 172 aa5.54□□□□□ -1.52
LIMA1-213ENST00000552720 IGHV1OR15-1A0A075B7D0 117 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 LOC107984156A0A0G2JMH3 177 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 TGFAP01135 160 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 SMCPP49901 116 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-213ENST00000552720 RPL32P62910 135 aaKnown RBP5.53□□□□□ -1.52
LIMA1-213ENST00000552720 DEFB136Q30KP8 78 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 ZNF876PQ49A33 203 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 C18orf65Q6ZTR6 163 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 ARL17AQ8IVW1 177 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 AMELXQ99217 191 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 Q9UF83 564 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 NOTCH3Q9UM47 2321 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 SONP18583 2426 aaKnown RBP5.53□□□□□ -1.52
LIMA1-213ENST00000552720 PSMB2P49721 201 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 TIMM17AQ99595 171 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 USP24Q9UPU5 2620 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 SETXQ7Z333 2677 aaKnown RBP5.53□□□□□ -1.52
LIMA1-213ENST00000552720 UBR5O95071 2799 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-213ENST00000552720 APCP25054 2843 aa5.53□□□□□ -1.52
LIMA1-213ENST00000552720 TRBV6-5A0A0K0K1A5 114 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 KNCNA6PVL3 124 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 IGHV3-30P01768 117 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 IGHV3-30-5P0DP03 117 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 AZU1P20160 251 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 HERVK_113P61574 105 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 SNRPD3P62318 126 aaKnown RBP5.52□□□□□ -1.53
LIMA1-213ENST00000552720 SMAGPQ0VAQ4 97 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 PTH2Q96A98 100 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 TMEM141Q96I45 108 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 GAGE12HA6NDE8 117 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 J3QQQ9 107 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 CFC1BP0CG36 223 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 CFC1P0CG37 223 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 HOXD3P31249 432 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-213ENST00000552720 CEMP1Q6PRD7 247 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-213ENST00000552720 NDUFA11Q86Y39 141 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 ZNF418Q8TF45 676 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-213ENST00000552720 DUX3Q96PT4 197 aa5.52□□□□□ -1.53
LIMA1-213ENST00000552720 NAV2Q8IVL1 2488 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 NBPF19A0A087WUL8 3843 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 A0A0J9YXV3 536 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 RNASE13Q5GAN3 156 aaKnown RBP5.51□□□□□ -1.53
LIMA1-213ENST00000552720 CFAP126Q5VTH2 177 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 SYT8Q8NBV8 401 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 JMJD1CQ15652 2540 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 EIF4EBP3O60516 100 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-213ENST00000552720 SLURP1P55000 103 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 NSUN5P1Q3KNT7 163 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 PAPPA-AS1Q5QFB9 102 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 SAMD13Q5VXD3 122 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 TRPT1Q86TN4 253 aaKnown RBP5.51□□□□□ -1.53
LIMA1-213ENST00000552720 NFE4Q86UQ8 179 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 SLC25A29Q8N8R3 303 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 C20orf203Q8NBC4 194 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 DLX4Q92988 240 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-213ENST00000552720 ODF3Q96PU9 254 aa5.51□□□□□ -1.53
LIMA1-213ENST00000552720 BEX4Q9NWD9 120 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-213ENST00000552720 ITPR3Q14573 2671 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 ADARB2-AS1A8MUL3 147 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 TCL1BO95988 128 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 ZNF22P17026 224 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-213ENST00000552720 LGALS3P17931 250 aaKnown RBP5.5□□□□□ -1.53
LIMA1-213ENST00000552720 FAM104AQ969W3 186 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 IGLV4-3A0A075B6K6 122 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 A0A096LNT2 108 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 TMEM223A0PJW6 202 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 RBMY1BA6NDE4 496 aaKnown RBP5.5□□□□□ -1.53
LIMA1-213ENST00000552720 RBMY1EA6NEQ0 496 aaKnown RBP5.5□□□□□ -1.53
LIMA1-213ENST00000552720 RBMY1DP0C7P1 496 aaKnown RBP5.5□□□□□ -1.53
LIMA1-213ENST00000552720 DEFB131AP59861 70 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 UBE2D3P61077 147 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 UBE2D2P62837 147 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 TCTEX1D4Q5JR98 221 aa5.5□□□□□ -1.53
LIMA1-213ENST00000552720 LINC01356Q8N9X3 169 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms