RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TCTE3Q8IZS6 198 aa10.77□□□□□ -0.69
VPS29-207ENST00000549970 DAZAP1Q96EP5 407 aaKnown RBP10.77□□□□□ -0.69
VPS29-207ENST00000549970 GNG4P50150 75 aa10.76□□□□□ -0.69
VPS29-207ENST00000549970 MEF2BQ02080 365 aaPredicted RBP10.76□□□□□ -0.69
VPS29-207ENST00000549970 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.76□□□□□ -0.69
VPS29-207ENST00000549970 OR2D3Q8NGH3 330 aa10.76□□□□□ -0.69
VPS29-207ENST00000549970 KIF25-AS1Q9Y6Z4 181 aa10.76□□□□□ -0.69
VPS29-207ENST00000549970 HERC1Q15751 4861 aa10.76□□□□□ -0.69
VPS29-207ENST00000549970 FAM229AH3BQW9 127 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 IFNA1P01562 189 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 MGPP08493 103 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 RPS20P60866 119 aaKnown RBP10.75□□□□□ -0.69
VPS29-207ENST00000549970 MPV17L2Q567V2 206 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 C15orf54Q8N8G6 183 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 FER1L6-AS1Q8NA97 138 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 CHCHD5Q9BSY4 110 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 MED9Q9NWA0 146 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 MYCBP2O75592 4640 aa10.75□□□□□ -0.69
VPS29-207ENST00000549970 C19orf71A6NCJ1 209 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 PDE6DO43924 150 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 CRPP02741 224 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 C1QBP02746 253 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 IGLC6P0CF74 106 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 BCL2P10415 239 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 Q0VG73 95 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 LINC01620Q4KN68 170 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 SLC51BQ86UW2 128 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 Q8N976 141 aa10.74□□□□□ -0.69
VPS29-207ENST00000549970 P01737 135 aa10.73□□□□□ -0.69
VPS29-207ENST00000549970 ANGP03950 147 aaKnown RBP10.73□□□□□ -0.69
VPS29-207ENST00000549970 ATRAIDQ6UW56 229 aa10.73□□□□□ -0.69
VPS29-207ENST00000549970 ENHOQ6UWT2 76 aa10.73□□□□□ -0.69
VPS29-207ENST00000549970 NTM-AS1Q6ZSK4 140 aa10.73□□□□□ -0.69
VPS29-207ENST00000549970 SMIM12Q96EX1 92 aa10.73□□□□□ -0.69
VPS29-207ENST00000549970 C1orf43Q9BWL3 253 aa10.73□□□□□ -0.69
VPS29-207ENST00000549970 TRBV20OR9-2A0A075B6H5 130 aa10.72□□□□□ -0.69
VPS29-207ENST00000549970 CACNG7P62955 275 aa10.72□□□□□ -0.69
VPS29-207ENST00000549970 VAX2Q9UIW0 290 aa10.72□□□□□ -0.69
VPS29-207ENST00000549970 XKRY2A2RUG3 117 aa10.71□□□□□ -0.69
VPS29-207ENST00000549970 PKIAP61925 76 aa10.71□□□□□ -0.69
VPS29-207ENST00000549970 TMEM97Q5BJF2 176 aa10.71□□□□□ -0.69
VPS29-207ENST00000549970 SUMO4Q6EEV6 95 aa10.71□□□□□ -0.69
VPS29-207ENST00000549970 Q6ZSA8 131 aa10.71□□□□□ -0.69
VPS29-207ENST00000549970 SRRM2Q9UQ35 2752 aaKnown RBP10.71□□□□□ -0.7
VPS29-207ENST00000549970 M0QY20 66 aa10.7□□□□□ -0.7
VPS29-207ENST00000549970 GAGE6Q13070 117 aa10.7□□□□□ -0.7
VPS29-207ENST00000549970 LYZL1Q6UWQ5 148 aa10.7□□□□□ -0.7
VPS29-207ENST00000549970 BIN3Q9NQY0 253 aa10.7□□□□□ -0.7
VPS29-207ENST00000549970 FLG2Q5D862 2391 aaPredicted RBP10.7□□□□□ -0.7
VPS29-207ENST00000549970 TRBV25-1A0A075B6N4 114 aa10.69□□□□□ -0.7
VPS29-207ENST00000549970 H7C1H1 209 aa10.69□□□□□ -0.7
VPS29-207ENST00000549970 CLPSL2Q6UWE3 100 aa10.69□□□□□ -0.7
VPS29-207ENST00000549970 F2Z2F3 143 aa10.68□□□□□ -0.7
VPS29-207ENST00000549970 HLA-DQA1P01909 254 aa10.68□□□□□ -0.7
VPS29-207ENST00000549970 TRGC1P0CF51 173 aa10.68□□□□□ -0.7
VPS29-207ENST00000549970 TAGLN2P37802 199 aaKnown RBP10.68□□□□□ -0.7
VPS29-207ENST00000549970 NKX2-5P52952 324 aaPredicted RBP10.68□□□□□ -0.7
VPS29-207ENST00000549970 RBX1P62877 108 aa10.68□□□□□ -0.7
VPS29-207ENST00000549970 Q6ZNX1 250 aa10.68□□□□□ -0.7
VPS29-207ENST00000549970 NUDT10Q8NFP7 164 aa10.68□□□□□ -0.7
VPS29-207ENST00000549970 NUDT11Q96G61 164 aa10.68□□□□□ -0.7
VPS29-207ENST00000549970 IGHV1-24A0A0C4DH33 117 aa10.67□□□□□ -0.7
VPS29-207ENST00000549970 NTF3P20783 257 aa10.67□□□□□ -0.7
VPS29-207ENST00000549970 MIAQ16674 131 aa10.67□□□□□ -0.7
VPS29-207ENST00000549970 IQCJQ1A5X6 159 aa10.67□□□□□ -0.7
VPS29-207ENST00000549970 C14orf177Q52M58 125 aa10.67□□□□□ -0.7
VPS29-207ENST00000549970 C9orf62Q8N4C0 152 aa10.67□□□□□ -0.7
VPS29-207ENST00000549970 DPH3P1Q9H4G8 78 aa10.67□□□□□ -0.7
VPS29-207ENST00000549970 hCG_2014768A0A024R1R8 64 aa10.66□□□□□ -0.7
VPS29-207ENST00000549970 RASL11AQ6T310 242 aa10.66□□□□□ -0.7
VPS29-207ENST00000549970 SCXQ7RTU7 201 aa10.66□□□□□ -0.7
VPS29-207ENST00000549970 AKAP14Q86UN6 197 aa10.66□□□□□ -0.7
VPS29-207ENST00000549970 LINC00528Q8N1L1 170 aa10.66□□□□□ -0.7
VPS29-207ENST00000549970 LINC00269Q8N2A0 174 aa10.66□□□□□ -0.7
VPS29-207ENST00000549970 RNASE7Q9H1E1 156 aaKnown RBP10.66□□□□□ -0.7
VPS29-207ENST00000549970 DMBT1Q9UGM3 2413 aaPredicted RBP10.66□□□□□ -0.7
VPS29-207ENST00000549970 USP17L23D6RBM5 183 aa10.65□□□□□ -0.7
VPS29-207ENST00000549970 K7EN84 100 aa10.65□□□□□ -0.7
VPS29-207ENST00000549970 CTRLP40313 264 aa10.65□□□□□ -0.7
VPS29-207ENST00000549970 OCC1Q8TAD7 63 aa10.65□□□□□ -0.7
VPS29-207ENST00000549970 DEFB104AQ8WTQ1 72 aa10.65□□□□□ -0.7
VPS29-207ENST00000549970 RPP21Q9H633 154 aaKnown RBP10.65□□□□□ -0.7
VPS29-207ENST00000549970 PRR34Q9NV39 138 aa10.65□□□□□ -0.7
VPS29-207ENST00000549970 TWIST1Q15672 202 aa10.64□□□□□ -0.71
VPS29-207ENST00000549970 ALKAL2Q6UX46 152 aa10.64□□□□□ -0.71
VPS29-207ENST00000549970 PLA2G1BP04054 148 aaKnown RBP10.63□□□□□ -0.71
VPS29-207ENST00000549970 WDR73Q6P4I2 378 aa10.63□□□□□ -0.71
VPS29-207ENST00000549970 TMEM243Q9BU79 118 aa10.63□□□□□ -0.71
VPS29-207ENST00000549970 NIT2Q9NQR4 276 aa10.63□□□□□ -0.71
VPS29-207ENST00000549970 REG3AQ06141 175 aa10.62□□□□□ -0.71
VPS29-207ENST00000549970 CHAC1Q9BUX1 264 aa10.62□□□□□ -0.71
VPS29-207ENST00000549970 CNFNQ9BYD5 112 aa10.62□□□□□ -0.71
VPS29-207ENST00000549970 IGLV10-54A0A075B6I4 117 aa10.61□□□□□ -0.71
VPS29-207ENST00000549970 PRSS1P07477 247 aa10.61□□□□□ -0.71
VPS29-207ENST00000549970 BLOC1S1P78537 153 aa10.61□□□□□ -0.71
VPS29-207ENST00000549970 KRTAP26-1Q6PEX3 210 aa10.61□□□□□ -0.71
VPS29-207ENST00000549970 C20orf203Q8NBC4 194 aa10.61□□□□□ -0.71
VPS29-207ENST00000549970 PGLYRP4Q96LB8 373 aa10.61□□□□□ -0.71
VPS29-207ENST00000549970 IGLV4-60A0A075B6I1 120 aa10.6□□□□□ -0.71
VPS29-207ENST00000549970 TRAV26-2A0A0B4J265 109 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 289.7 ms