RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF56Q15929 161 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 SDIM1Q6ZPB5 146 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 NTM-AS1Q6ZSK4 140 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 OR10AG1Q8NH19 301 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 SSBP4Q9BWG4 385 aaPredicted RBP8.7□□□□□ -1.02
SS18-204ENST00000539244 MAP1LC3BQ9GZQ8 125 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 MED28Q9H204 178 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 PANO1I0J062 215 aa8.69□□□□□ -1.02
SS18-204ENST00000539244 Q6ZRU5 148 aa8.69□□□□□ -1.02
SS18-204ENST00000539244 CLRN3Q8NCR9 226 aa8.69□□□□□ -1.02
SS18-204ENST00000539244 ZNF471Q9BX82 626 aaPredicted RBP8.69□□□□□ -1.02
SS18-204ENST00000539244 OR5AL1P0C617 328 aa8.68□□□□□ -1.02
SS18-204ENST00000539244 AKR1C3P42330 323 aa8.68□□□□□ -1.02
SS18-204ENST00000539244 CNBPP62633 177 aaKnown RBP8.68□□□□□ -1.02
SS18-204ENST00000539244 RBX1P62877 108 aa8.68□□□□□ -1.02
SS18-204ENST00000539244 TNXBP22105 4242 aa8.68□□□□□ -1.02
SS18-204ENST00000539244 FXYD6-FXYD2A0A087WZ82 144 aa8.67□□□□□ -1.02
SS18-204ENST00000539244 A0A0D9SG52 128 aa8.67□□□□□ -1.02
SS18-204ENST00000539244 CST9LP1Q5W188 147 aa8.67□□□□□ -1.02
SS18-204ENST00000539244 LINC00269Q8N2A0 174 aa8.67□□□□□ -1.02
SS18-204ENST00000539244 MLST8Q9BVC4 326 aa8.67□□□□□ -1.02
SS18-204ENST00000539244 KIF25-AS1Q9Y6Z4 181 aa8.67□□□□□ -1.02
SS18-204ENST00000539244 TRBV25-1A0A075B6N4 114 aa8.66□□□□□ -1.02
SS18-204ENST00000539244 S100A9P06702 114 aaKnown RBP8.66□□□□□ -1.02
SS18-204ENST00000539244 IQCJQ1A5X6 159 aa8.66□□□□□ -1.02
SS18-204ENST00000539244 CLPSL2Q6UWE3 100 aa8.66□□□□□ -1.02
SS18-204ENST00000539244 STOML3Q8TAV4 291 aa8.66□□□□□ -1.02
SS18-204ENST00000539244 DERL1Q9BUN8 251 aa8.66□□□□□ -1.02
SS18-204ENST00000539244 F5H697 171 aa8.65□□□□□ -1.02
SS18-204ENST00000539244 GAGE6Q13070 117 aa8.65□□□□□ -1.02
SS18-204ENST00000539244 SPANXN1Q5VSR9 72 aa8.65□□□□□ -1.02
SS18-204ENST00000539244 CYTL1Q9NRR1 136 aa8.65□□□□□ -1.02
SS18-204ENST00000539244 TRAV8-4A0A0B4J246 113 aa8.64□□□□□ -1.03
SS18-204ENST00000539244 G3V3Q6 166 aa8.64□□□□□ -1.03
SS18-204ENST00000539244 PAGE4O60829 102 aa8.64□□□□□ -1.03
SS18-204ENST00000539244 P01737 135 aa8.64□□□□□ -1.03
SS18-204ENST00000539244 REG3AQ06141 175 aa8.64□□□□□ -1.03
SS18-204ENST00000539244 RNF185Q96GF1 192 aa8.64□□□□□ -1.03
SS18-204ENST00000539244 AP1S3Q96PC3 154 aa8.64□□□□□ -1.03
SS18-204ENST00000539244 IGHV1-24A0A0C4DH33 117 aa8.63□□□□□ -1.03
SS18-204ENST00000539244 A0A1B0GUV1 79 aa8.63□□□□□ -1.03
SS18-204ENST00000539244 SMIM17P0DL12 118 aa8.63□□□□□ -1.03
SS18-204ENST00000539244 BAGE2Q86Y30 109 aa8.63□□□□□ -1.03
SS18-204ENST00000539244 C20orf203Q8NBC4 194 aa8.63□□□□□ -1.03
SS18-204ENST00000539244 MUC21A0A0G2JKD1 596 aa8.62□□□□□ -1.03
SS18-204ENST00000539244 MUC21A0A140T8X8 626 aa8.62□□□□□ -1.03
SS18-204ENST00000539244 SCO2A0A1W2PP80 73 aa8.62□□□□□ -1.03
SS18-204ENST00000539244 M0QY20 66 aa8.62□□□□□ -1.03
SS18-204ENST00000539244 SLPIP03973 132 aa8.62□□□□□ -1.03
SS18-204ENST00000539244 GZMBP10144 247 aa8.62□□□□□ -1.03
SS18-204ENST00000539244 MBD3L1Q8WWY6 194 aa8.62□□□□□ -1.03
SS18-204ENST00000539244 IGLV10-54A0A075B6I4 117 aa8.61□□□□□ -1.03
SS18-204ENST00000539244 IGHV3-64A0A075B6Q5 118 aa8.61□□□□□ -1.03
SS18-204ENST00000539244 A0A087WYN8 130 aa8.61□□□□□ -1.03
SS18-204ENST00000539244 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.61□□□□□ -1.03
SS18-204ENST00000539244 hDV102S1A0JD36 115 aa8.61□□□□□ -1.03
SS18-204ENST00000539244 SPACA4Q8TDM5 124 aa8.61□□□□□ -1.03
SS18-204ENST00000539244 H7C1H1 209 aa8.6□□□□□ -1.03
SS18-204ENST00000539244 AP5S1Q9NUS5 200 aa8.6□□□□□ -1.03
SS18-204ENST00000539244 PLAC8Q9NZF1 115 aa8.6□□□□□ -1.03
SS18-204ENST00000539244 IGLV4-60A0A075B6I1 120 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 ARPC5O15511 151 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 PFDN1O60925 122 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 IGLC6P0CF74 106 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 CHTF8P0CG12 524 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 SFT2D1Q8WV19 159 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 PGLYRP4Q96LB8 373 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 TMEM243Q9BU79 118 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 GFRA4Q9GZZ7 299 aa8.59□□□□□ -1.03
SS18-204ENST00000539244 LRP2P98164 4655 aa8.59□□□□□ -1.04
SS18-204ENST00000539244 UMAD1C9J7I0 102 aa8.58□□□□□ -1.04
SS18-204ENST00000539244 SSTP61278 116 aa8.58□□□□□ -1.04
SS18-204ENST00000539244 SUMO4Q6EEV6 95 aa8.58□□□□□ -1.04
SS18-204ENST00000539244 TMUB2Q71RG4 321 aa8.58□□□□□ -1.04
SS18-204ENST00000539244 MGPP08493 103 aa8.57□□□□□ -1.04
SS18-204ENST00000539244 FAM213BQ8TBF2 198 aa8.57□□□□□ -1.04
SS18-204ENST00000539244 DPH3Q96FX2 82 aa8.57□□□□□ -1.04
SS18-204ENST00000539244 PHOX2AO14813 284 aa8.56□□□□□ -1.04
SS18-204ENST00000539244 RPL35P42766 123 aaKnown RBP8.56□□□□□ -1.04
SS18-204ENST00000539244 NKX2-5P52952 324 aaPredicted RBP8.56□□□□□ -1.04
SS18-204ENST00000539244 CACNG7P62955 275 aa8.56□□□□□ -1.04
SS18-204ENST00000539244 ZNF345Q14585 488 aa8.56□□□□□ -1.04
SS18-204ENST00000539244 RASL11AQ6T310 242 aa8.56□□□□□ -1.04
SS18-204ENST00000539244 C15orf56Q8N910 161 aa8.56□□□□□ -1.04
SS18-204ENST00000539244 FER1L6-AS1Q8NA97 138 aa8.56□□□□□ -1.04
SS18-204ENST00000539244 A0A1B0GV50 99 aa8.55□□□□□ -1.04
SS18-204ENST00000539244 RPS20P60866 119 aaKnown RBP8.55□□□□□ -1.04
SS18-204ENST00000539244 WDR73Q6P4I2 378 aa8.55□□□□□ -1.04
SS18-204ENST00000539244 KCNRGQ8N5I3 272 aa8.55□□□□□ -1.04
SS18-204ENST00000539244 C7orf33Q8WU49 177 aa8.55□□□□□ -1.04
SS18-204ENST00000539244 C11orf52Q96A22 123 aa8.55□□□□□ -1.04
SS18-204ENST00000539244 LINC01600Q96MT4 127 aa8.55□□□□□ -1.04
SS18-204ENST00000539244 NIT2Q9NQR4 276 aa8.55□□□□□ -1.04
SS18-204ENST00000539244 C19orf71A6NCJ1 209 aa8.54□□□□□ -1.04
SS18-204ENST00000539244 H2AFB1P0C5Y9 115 aa8.54□□□□□ -1.04
SS18-204ENST00000539244 RAB5CP51148 216 aa8.54□□□□□ -1.04
SS18-204ENST00000539244 CFAP161Q6P656 301 aa8.54□□□□□ -1.04
SS18-204ENST00000539244 F2Z2F3 143 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 UBE2L6O14933 153 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 NDUFS6O75380 124 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms