RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 XCL2Q9UBD3 114 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 S4R3C0 116 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 NBR2O15453 112 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 FAM223AQ8IWN6 122 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 A0A087WVE0 104 aa9.19□□□□□ -0.94
USP3-203ENST00000538686 M0R1B8 84 aa9.19□□□□□ -0.94
USP3-203ENST00000538686 LOXP28300 417 aaPredicted RBP9.19□□□□□ -0.94
USP3-203ENST00000538686 LY6G5BQ8NDX9 201 aa9.19□□□□□ -0.94
USP3-203ENST00000538686 ABCA1O95477 2261 aa9.19□□□□□ -0.94
USP3-203ENST00000538686 PRR9Q5T870 116 aa9.19□□□□□ -0.94
USP3-203ENST00000538686 OBSCN-AS1Q96MR7 158 aa9.19□□□□□ -0.94
USP3-203ENST00000538686 ZNF580Q9UK33 172 aa9.19□□□□□ -0.94
USP3-203ENST00000538686 NPBQ8NG41 125 aa9.18□□□□□ -0.94
USP3-203ENST00000538686 LINC00846Q9NV44 126 aa9.18□□□□□ -0.94
USP3-203ENST00000538686 PRRC2AP48634 2157 aaKnown RBP9.17□□□□□ -0.94
USP3-203ENST00000538686 TRBV10-3A0A0K0K1G6 114 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 H7BZZ5 65 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 NDUFA1O15239 70 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 PF4P02776 101 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 RNASE3P12724 160 aaKnown RBP9.17□□□□□ -0.94
USP3-203ENST00000538686 C20orf197Q8N268 126 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 ZFAND2AQ8N6M9 145 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 WFDC11Q8NEX6 87 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 BRK1Q8WUW1 75 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 KAAG1Q9UBP8 84 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 C6orf226Q5I0X4 101 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 FP248Q71RG6 208 aaPredicted RBP9.17□□□□□ -0.94
USP3-203ENST00000538686 LINC00308Q8TCZ7 52 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 OPRPNQ99935 248 aaPredicted RBP9.17□□□□□ -0.94
USP3-203ENST00000538686 MALRD1Q5VYJ5 2156 aa9.17□□□□□ -0.94
USP3-203ENST00000538686 F5H697 171 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 VMO1Q7Z5L0 202 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 PRSS33Q8NF86 280 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 NACAE9PAV3 2078 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 NDUFC1O43677 76 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 FAM27E3Q08E93 113 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 KLKP1Q107X0 134 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 APRG1Q8IVJ8 170 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 Q8N2B8 174 aa9.16□□□□□ -0.94
USP3-203ENST00000538686 SOCS3O14543 225 aa9.15□□□□□ -0.94
USP3-203ENST00000538686 CD28P10747 220 aa9.15□□□□□ -0.94
USP3-203ENST00000538686 ZNF318Q5VUA4 2279 aa9.15□□□□□ -0.95
USP3-203ENST00000538686 TRAV7A0A075B6U4 112 aa9.14□□□□□ -0.95
USP3-203ENST00000538686 AVPP01185 164 aa9.14□□□□□ -0.95
USP3-203ENST00000538686 C9orf106Q8NAJ2 232 aa9.14□□□□□ -0.95
USP3-203ENST00000538686 TRBV12-3P01733 135 aa9.14□□□□□ -0.95
USP3-203ENST00000538686 HIST2H2BCQ6DN03 193 aa9.14□□□□□ -0.95
USP3-203ENST00000538686 HIST2H2BDQ6DRA6 164 aa9.14□□□□□ -0.95
USP3-203ENST00000538686 FAM110DQ8TAY7 271 aaPredicted RBP9.14□□□□□ -0.95
USP3-203ENST00000538686 FAM186AA6NE01 2351 aa9.13□□□□□ -0.95
USP3-203ENST00000538686 COL27A1Q8IZC6 1860 aaPredicted RBP9.13□□□□□ -0.95
USP3-203ENST00000538686 IGHV3-23P01764 117 aa9.13□□□□□ -0.95
USP3-203ENST00000538686 RPL28P46779 137 aaKnown RBP9.13□□□□□ -0.95
USP3-203ENST00000538686 RPL11P62913 178 aaKnown RBP9.13□□□□□ -0.95
USP3-203ENST00000538686 ITLN2Q8WWU7 325 aaPredicted RBP9.13□□□□□ -0.95
USP3-203ENST00000538686 ZNF576Q9H609 170 aa9.13□□□□□ -0.95
USP3-203ENST00000538686 C14orf132Q9NPU4 83 aa9.13□□□□□ -0.95
USP3-203ENST00000538686 TRAV13-2A0A0B4J235 113 aa9.12□□□□□ -0.95
USP3-203ENST00000538686 LYPD2Q6UXB3 125 aa9.12□□□□□ -0.95
USP3-203ENST00000538686 FAM218AQ96MZ4 157 aa9.12□□□□□ -0.95
USP3-203ENST00000538686 LAMTOR3Q9UHA4 124 aa9.12□□□□□ -0.95
USP3-203ENST00000538686 CHD9Q3L8U1 2897 aa9.12□□□□□ -0.95
USP3-203ENST00000538686 A0A0U1RQV1 116 aa9.11□□□□□ -0.95
USP3-203ENST00000538686 M0QY20 66 aa9.11□□□□□ -0.95
USP3-203ENST00000538686 GNRH2O43555 120 aa9.11□□□□□ -0.95
USP3-203ENST00000538686 CLPSL1A2RUU4 121 aa9.11□□□□□ -0.95
USP3-203ENST00000538686 CFHR3Q02985 330 aa9.11□□□□□ -0.95
USP3-203ENST00000538686 RNASE6Q93091 150 aaKnown RBP9.11□□□□□ -0.95
USP3-203ENST00000538686 H0YGX0 51 aa9.1□□□□□ -0.95
USP3-203ENST00000538686 CDSNQ15517 529 aa9.1□□□□□ -0.95
USP3-203ENST00000538686 LYPD5Q6UWN5 251 aa9.1□□□□□ -0.95
USP3-203ENST00000538686 U3KQE9 123 aa9.1□□□□□ -0.95
USP3-203ENST00000538686 TRAV23DV6A0A075B6W5 121 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 IGHV3OR16-8A0A075B7F1 116 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 A0A087WWL8 130 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 TRBV7-6A0A0J9YX20 115 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 TRANK1O15050 2925 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 CCKP06307 115 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 KLK9Q2XQG4 91 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 DEFB104AQ8WTQ1 72 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 Q9HAA7 133 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 KLK9Q9UKQ9 250 aa9.09□□□□□ -0.95
USP3-203ENST00000538686 IGF1P05019 195 aa9.08□□□□□ -0.96
USP3-203ENST00000538686 C1orf158Q8N1D5 194 aa9.08□□□□□ -0.96
USP3-203ENST00000538686 CACNA1GO43497 2377 aa9.08□□□□□ -0.96
USP3-203ENST00000538686 CACNA1EQ15878 2313 aa9.08□□□□□ -0.96
USP3-203ENST00000538686 IGHV3-66A0A0C4DH42 116 aa9.08□□□□□ -0.96
USP3-203ENST00000538686 EPOPA6NHQ4 379 aa9.08□□□□□ -0.96
USP3-203ENST00000538686 COX7A1P24310 79 aa9.08□□□□□ -0.96
USP3-203ENST00000538686 RBM3P98179 157 aaKnown RBP9.08□□□□□ -0.96
USP3-203ENST00000538686 CCL17Q92583 94 aa9.07□□□□□ -0.96
USP3-203ENST00000538686 WDR87Q6ZQQ6 2873 aa9.07□□□□□ -0.96
USP3-203ENST00000538686 IGLV5-45A0A087WSX0 123 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 IGHV3-35A0A0C4DH35 117 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 HILS1P60008 231 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 SIRPDQ9H106 197 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 DPM3Q9P2X0 92 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 CRPP02741 224 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 BLCAPP62952 87 aa9.06□□□□□ -0.96
USP3-203ENST00000538686 PMAIP1Q13794 54 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms