RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 C17orf51A8MQB3 221 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 INSP01308 110 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 KRTAP1-4P0C5Y4 121 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 CCL1P22362 96 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 EFNA4P52798 201 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 ATP5EP56381 51 aaPredicted RBP2.41□□□□□ -2.02
CSMD3-210ENST00000534172 ZNF816Q0VGE8 651 aaPredicted RBP2.41□□□□□ -2.02
CSMD3-210ENST00000534172 CST6Q15828 149 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 ZNF56Q15929 161 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 CLLU1OSQ5K130 101 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 LYPD2Q6UXB3 125 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 SLC22A24Q8N4F4 322 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 TRGV9Q99603 122 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 UPK3BQ9BT76 320 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 ZNF706Q9Y5V0 76 aaPredicted RBP2.41□□□□□ -2.02
CSMD3-210ENST00000534172 HIVEP1P15822 2718 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 DOCK9Q9BZ29 2069 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 RYR3Q15413 4870 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 IGHV1-58A0A0C4DH39 117 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 UBE2L5PA0A1B0GUS4 154 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 H3BMM0 161 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 COX7A2P2O60397 106 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 IGLV2-8P01709 118 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 DNAH10OSP0CZ25 163 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 NPPCP23582 126 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 MP68P56378 58 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 RPL18Q07020 188 aaKnown RBP2.41□□□□□ -2.02
CSMD3-210ENST00000534172 ERCC8Q13216 396 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 DEFB121Q5J5C9 76 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 CAMK2N1Q7Z7J9 78 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 C5orf38Q86SI9 138 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 LINC00596Q86U02 117 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 UBE2WQ96B02 151 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 IFI27L1Q96BM0 104 aa2.41□□□□□ -2.02
CSMD3-210ENST00000534172 DOCK4Q8N1I0 1966 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 H3BVH4 76 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 CCL16O15467 120 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 SS18L1O75177 396 aaPredicted RBP2.4□□□□□ -2.03
CSMD3-210ENST00000534172 PCBD1P61457 104 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 ABCA11PQ4W5N1 156 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 TMEM155Q4W5P6 130 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 C1orf140Q5VVS0 124 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 MARCH3Q86UD3 253 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 TMEM75Q8N9X5 138 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 LY6G5BQ8NDX9 201 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 EML5Q05BV3 1969 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 URB1O60287 2271 aaKnown RBP2.4□□□□□ -2.03
CSMD3-210ENST00000534172 TRBV25-1A0A075B6N4 114 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 IGHV3-74A0A0B4J1X5 117 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 C19orf71A6NCJ1 209 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 NDUFB3O43676 98 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 FAM104BQ5XKR9 115 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 KTN1-AS1Q86SY8 53 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 ZNF799Q96GE5 643 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 Q9Y3F1 56 aa2.4□□□□□ -2.03
CSMD3-210ENST00000534172 SPAG17Q6Q759 2223 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 NUP214P35658 2090 aaPredicted RBP2.39□□□□□ -2.03
CSMD3-210ENST00000534172 KIAA2026Q5HYC2 2103 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 ATRQ13535 2644 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 KIAA1549Q9HCM3 1950 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 LOC400499M0QZD8 3231 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 NBPF19A0A087WUL8 3843 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 LOC107984156A0A0G2JMH3 177 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 CPSF4LA6NMK7 179 aaKnown RBP2.39□□□□□ -2.03
CSMD3-210ENST00000534172 INS-IGF2F8WCM5 200 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 IGHV4-34P06331 123 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 LGALS3P17931 250 aaKnown RBP2.39□□□□□ -2.03
CSMD3-210ENST00000534172 KRTAP10-3P60369 221 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 SNRPD3P62318 126 aaKnown RBP2.39□□□□□ -2.03
CSMD3-210ENST00000534172 KRTAP5-11Q6L8G4 156 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 SLC48A1Q6P1K1 146 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 FP248Q71RG6 208 aaPredicted RBP2.39□□□□□ -2.03
CSMD3-210ENST00000534172 LYZL2Q7Z4W2 148 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 ARL17AQ8IVW1 177 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 RPRMLQ8N4K4 120 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 RPP25LQ8N5L8 163 aaKnown RBP2.39□□□□□ -2.03
CSMD3-210ENST00000534172 FAM104AQ969W3 186 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 ZNF414Q96IQ9 312 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 Q96M85 177 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 TM2D3Q9BRN9 247 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 DYNLRB1Q9NP97 96 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 TMEM14AQ9Y6G1 99 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 PCNX2A6NKB5 2137 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 CCDC168Q8NDH2 2452 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 MTORP42345 2549 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 TRBV20OR9-2A0A075B6H5 130 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 TRBV7-3A0A075B6L6 115 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 TMSB15BA0A087X1C1 80 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 IGKV6-21A0A0C4DH24 114 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 A0A0D9SEW6 157 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 HBDP02042 147 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 IFI6P09912 130 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 ZFP2Q6ZN57 461 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 LRBAP50851 2863 aa2.39□□□□□ -2.03
CSMD3-210ENST00000534172 MED13Q9UHV7 2174 aa2.38□□□□□ -2.03
CSMD3-210ENST00000534172 ASXL3Q9C0F0 2248 aa2.38□□□□□ -2.03
CSMD3-210ENST00000534172 ANAPC1Q9H1A4 1944 aa2.38□□□□□ -2.03
CSMD3-210ENST00000534172 PCDH15Q96QU1 1955 aa2.38□□□□□ -2.03
CSMD3-210ENST00000534172 TRBV10-2A0A0K0K1G8 114 aa2.38□□□□□ -2.03
CSMD3-210ENST00000534172 SLC25A16P16260 332 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms