RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 C9orf62Q8N4C0 152 aa8.86□□□□□ -0.99
VPS28-211ENST00000530790 NEXN-AS1Q8NBZ9 246 aa8.86□□□□□ -0.99
VPS28-211ENST00000530790 BIN3Q9NQY0 253 aa8.86□□□□□ -0.99
VPS28-211ENST00000530790 TRBV20OR9-2A0A075B6H5 130 aa8.85□□□□□ -0.99
VPS28-211ENST00000530790 C19orf71A6NCJ1 209 aa8.85□□□□□ -0.99
VPS28-211ENST00000530790 RBFOX3A6NFN3 312 aa8.85□□□□□ -0.99
VPS28-211ENST00000530790 IGLC6P0CF74 106 aa8.85□□□□□ -0.99
VPS28-211ENST00000530790 KLK12Q9UKR0 248 aa8.85□□□□□ -0.99
VPS28-211ENST00000530790 TRBV6-8A0A0A6YYG3 113 aa8.84□□□□□ -0.99
VPS28-211ENST00000530790 MGPP08493 103 aa8.84□□□□□ -0.99
VPS28-211ENST00000530790 XGP55808 180 aa8.84□□□□□ -0.99
VPS28-211ENST00000530790 CACNG7P62955 275 aa8.84□□□□□ -0.99
VPS28-211ENST00000530790 IGKV2D-24A0A075B6R9 120 aa8.83□□□□□ -1
VPS28-211ENST00000530790 EPM2AB3EWF7 344 aa8.83□□□□□ -1
VPS28-211ENST00000530790 TMEM262E9PQX1 116 aa8.83□□□□□ -1
VPS28-211ENST00000530790 LECT2O14960 151 aa8.83□□□□□ -1
VPS28-211ENST00000530790 PKIAP61925 76 aa8.83□□□□□ -1
VPS28-211ENST00000530790 WFDC2Q14508 124 aa8.83□□□□□ -1
VPS28-211ENST00000530790 TMEM97Q5BJF2 176 aa8.83□□□□□ -1
VPS28-211ENST00000530790 UBE2WQ96B02 151 aa8.83□□□□□ -1
VPS28-211ENST00000530790 KIF25-AS1Q9Y6Z4 181 aa8.83□□□□□ -1
VPS28-211ENST00000530790 F2Z2F3 143 aa8.82□□□□□ -1
VPS28-211ENST00000530790 H7C1H1 209 aa8.82□□□□□ -1
VPS28-211ENST00000530790 CRPP02741 224 aa8.82□□□□□ -1
VPS28-211ENST00000530790 ALKAL2Q6UX46 152 aa8.82□□□□□ -1
VPS28-211ENST00000530790 CHCHD5Q9BSY4 110 aa8.82□□□□□ -1
VPS28-211ENST00000530790 TMEM70Q9BUB7 260 aa8.82□□□□□ -1
VPS28-211ENST00000530790 TRGC1P0CF51 173 aa8.81□□□□□ -1
VPS28-211ENST00000530790 BLOC1S1P78537 153 aa8.81□□□□□ -1
VPS28-211ENST00000530790 Q0VG73 95 aa8.81□□□□□ -1
VPS28-211ENST00000530790 MPV17L2Q567V2 206 aa8.81□□□□□ -1
VPS28-211ENST00000530790 LYZL1Q6UWQ5 148 aa8.81□□□□□ -1
VPS28-211ENST00000530790 C15orf54Q8N8G6 183 aa8.81□□□□□ -1
VPS28-211ENST00000530790 BAALCQ8WXS3 180 aa8.81□□□□□ -1
VPS28-211ENST00000530790 DNAJC30Q96LL9 226 aa8.81□□□□□ -1
VPS28-211ENST00000530790 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.8□□□□□ -1
VPS28-211ENST00000530790 CTRLP40313 264 aa8.8□□□□□ -1
VPS28-211ENST00000530790 Q5VSD8 79 aa8.8□□□□□ -1
VPS28-211ENST00000530790 SUMO4Q6EEV6 95 aa8.8□□□□□ -1
VPS28-211ENST00000530790 ATRAIDQ6UW56 229 aa8.8□□□□□ -1
VPS28-211ENST00000530790 FRZBQ92765 325 aa8.8□□□□□ -1
VPS28-211ENST00000530790 RPP21Q9H633 154 aaKnown RBP8.8□□□□□ -1
VPS28-211ENST00000530790 TRBV25-1A0A075B6N4 114 aa8.79□□□□□ -1
VPS28-211ENST00000530790 TMEM250H0YL14 139 aa8.79□□□□□ -1
VPS28-211ENST00000530790 M0QY20 66 aa8.79□□□□□ -1
VPS28-211ENST00000530790 ANGP03950 147 aaKnown RBP8.79□□□□□ -1
VPS28-211ENST00000530790 NUDT10Q8NFP7 164 aa8.79□□□□□ -1
VPS28-211ENST00000530790 NUDT11Q96G61 164 aa8.79□□□□□ -1
VPS28-211ENST00000530790 C1orf43Q9BWL3 253 aa8.79□□□□□ -1
VPS28-211ENST00000530790 DPH3P1Q9H4G8 78 aa8.79□□□□□ -1
VPS28-211ENST00000530790 K7EN84 100 aa8.78□□□□□ -1
VPS28-211ENST00000530790 NTF3P20783 257 aa8.78□□□□□ -1
VPS28-211ENST00000530790 HAMPP81172 84 aa8.78□□□□□ -1
VPS28-211ENST00000530790 NTM-AS1Q6ZSK4 140 aa8.78□□□□□ -1
VPS28-211ENST00000530790 Q8N976 141 aa8.78□□□□□ -1
VPS28-211ENST00000530790 RNASE7Q9H1E1 156 aaKnown RBP8.78□□□□□ -1
VPS28-211ENST00000530790 IGHV1-24A0A0C4DH33 117 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 NKX2-5P52952 324 aaPredicted RBP8.77□□□□□ -1.01
VPS28-211ENST00000530790 GAGE6Q13070 117 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 TWIST1Q15672 202 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 IQCJQ1A5X6 159 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 WDR73Q6P4I2 378 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 RASL11AQ6T310 242 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 ENHOQ6UWT2 76 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 OCC1Q8TAD7 63 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 CNFNQ9BYD5 112 aa8.77□□□□□ -1.01
VPS28-211ENST00000530790 SMR3BP02814 79 aaPredicted RBP8.76□□□□□ -1.01
VPS28-211ENST00000530790 CEBPGP53567 150 aa8.76□□□□□ -1.01
VPS28-211ENST00000530790 RBX1P62877 108 aa8.76□□□□□ -1.01
VPS28-211ENST00000530790 MIAQ16674 131 aa8.76□□□□□ -1.01
VPS28-211ENST00000530790 LYPD6BQ8NI32 183 aa8.76□□□□□ -1.01
VPS28-211ENST00000530790 HLA-DQA1P01909 254 aa8.75□□□□□ -1.01
VPS28-211ENST00000530790 C14orf177Q52M58 125 aa8.75□□□□□ -1.01
VPS28-211ENST00000530790 CLPSL2Q6UWE3 100 aa8.75□□□□□ -1.01
VPS28-211ENST00000530790 NIT2Q9NQR4 276 aa8.75□□□□□ -1.01
VPS28-211ENST00000530790 FAM229AH3BQW9 127 aa8.74□□□□□ -1.01
VPS28-211ENST00000530790 SMIM15Q7Z3B0 74 aa8.74□□□□□ -1.01
VPS28-211ENST00000530790 PGLYRP4Q96LB8 373 aa8.74□□□□□ -1.01
VPS28-211ENST00000530790 TMEM243Q9BU79 118 aa8.74□□□□□ -1.01
VPS28-211ENST00000530790 EIF5A2Q9GZV4 153 aaKnown RBP8.74□□□□□ -1.01
VPS28-211ENST00000530790 FAM30AQ9NZY2 134 aa8.74□□□□□ -1.01
VPS28-211ENST00000530790 GATCO43716 136 aaKnown RBP8.73□□□□□ -1.01
VPS28-211ENST00000530790 INAFM2P0DMQ5 153 aa8.73□□□□□ -1.01
VPS28-211ENST00000530790 Q6ZSA8 131 aa8.73□□□□□ -1.01
VPS28-211ENST00000530790 FAM231DQ6ZW35 169 aa8.73□□□□□ -1.01
VPS28-211ENST00000530790 LINC00269Q8N2A0 174 aa8.73□□□□□ -1.01
VPS28-211ENST00000530790 GTSF1Q8WW33 167 aa8.73□□□□□ -1.01
VPS28-211ENST00000530790 PRR34Q9NV39 138 aa8.73□□□□□ -1.01
VPS28-211ENST00000530790 A8MWL6 223 aa8.72□□□□□ -1.01
VPS28-211ENST00000530790 UBE2L6O14933 153 aa8.72□□□□□ -1.01
VPS28-211ENST00000530790 LINC01620Q4KN68 170 aa8.72□□□□□ -1.01
VPS28-211ENST00000530790 SMIM7Q9BQ49 75 aa8.72□□□□□ -1.01
VPS28-211ENST00000530790 TRAV26-2A0A0B4J265 109 aa8.71□□□□□ -1.02
VPS28-211ENST00000530790 NDUFS6O75380 124 aaKnown RBP8.71□□□□□ -1.02
VPS28-211ENST00000530790 AMTP48728 403 aa8.71□□□□□ -1.02
VPS28-211ENST00000530790 COTL1Q14019 142 aa8.71□□□□□ -1.02
VPS28-211ENST00000530790 CT83Q5H943 113 aa8.71□□□□□ -1.02
VPS28-211ENST00000530790 BORCS7Q96B45 105 aa8.71□□□□□ -1.02
VPS28-211ENST00000530790 FAM210AQ96ND0 272 aa8.71□□□□□ -1.02
VPS28-211ENST00000530790 USP17L23D6RBM5 183 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms