RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 RGPD4Q7Z3J3 1758 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 BDP1A6H8Y1 2624 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 KCPQ6ZWJ8 1503 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 ARHGEF28Q8N1W1 1705 aaKnown RBP1.47□□□□□ -2.17
CD44-216ENST00000525293 TRBV7-3A0A075B6L6 115 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 TRBV10-2A0A0K0K1G8 114 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 LHBP01229 141 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 IGHV1-69P01742 117 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 IGHV3-11P01762 117 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 IGHV3-23P01764 117 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 IGHV4-34P06331 123 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 RPL28P46779 137 aaKnown RBP1.47□□□□□ -2.17
CD44-216ENST00000525293 KLKP1Q107X0 134 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 C9orf116Q5BN46 136 aaPredicted RBP1.47□□□□□ -2.17
CD44-216ENST00000525293 CASC10Q5T4H9 136 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 VMO1Q7Z5L0 202 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 Q8N6K4 173 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 Q8NDZ9 215 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 CIRBP-AS1Q8TBR5 109 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 KLF14Q8TD94 323 aaPredicted RBP1.47□□□□□ -2.17
CD44-216ENST00000525293 DYNLRB2Q8TF09 96 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 SMIM7Q9BQ49 75 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 TIMM21Q9BVV7 248 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 U3KQK5 164 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 PREX1Q8TCU6 1659 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 POLEQ07864 2286 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 COL6A5A8TX70 2615 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 NOTCH1P46531 2555 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 RGPD3A6NKT7 1758 aaPredicted RBP1.47□□□□□ -2.17
CD44-216ENST00000525293 RGPD2P0DJD1 1756 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 MAST2Q6P0Q8 1798 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 KIDINS220Q9ULH0 1771 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 ARHGEF5Q12774 1597 aa1.47□□□□□ -2.17
CD44-216ENST00000525293 PLXNB3Q9ULL4 1909 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 ANKRD11Q6UB99 2663 aaPredicted RBP1.46□□□□□ -2.18
CD44-216ENST00000525293 CPS1P31327 1500 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 NACAE9PAV3 2078 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 MYO5AQ9Y4I1 1855 aaKnown RBP1.46□□□□□ -2.18
CD44-216ENST00000525293 CLTCQ00610 1675 aaKnown RBP1.46□□□□□ -2.18
CD44-216ENST00000525293 TOPAZ1Q8N9V7 1692 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 CFAP43Q8NDM7 1665 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 DSCAMO60469 2012 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 IGHV3-21A0A0B4J1V1 117 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 A0A1B0GW54 56 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 hDV103S1A0JD37 113 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 LINC01549A6NIU2 74 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 CEBPZOSA8MTT3 80 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 NDUFC1O43677 76 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 BCE1O60756 84 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 LEPROTL1O95214 131 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 CLPSP04118 112 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 HMGN2P05204 90 aaKnown RBP1.46□□□□□ -2.18
CD44-216ENST00000525293 BAALC-AS2P0C853 105 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 P0C880 135 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 TLX1NBP0CAT3 122 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 IGHV3-30-3P0DP02 117 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 MIFP14174 115 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 SMIM11AP58511 58 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 FXYD7P58549 80 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 ROMO1P60602 79 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 Q6JHZ5 121 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 SLC48A1Q6P1K1 146 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 Q6ZQT0 140 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 Q6ZS52 159 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 NDUFA11Q86Y39 141 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 ZNF563Q8TA94 476 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 IFI27L1Q96BM0 104 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 Q96M85 177 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 ABRACLQ9P1F3 81 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 KLK12Q9UKR0 248 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 EML6Q6ZMW3 1958 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 NUP188Q5SRE5 1749 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 MUC19Q7Z5P9 8384 aa1.46□□□□□ -2.18
CD44-216ENST00000525293 COL4A6Q14031 1691 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 ZNF236Q9UL36 1845 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 KIF21BO75037 1637 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 CICQ96RK0 1608 aaPredicted RBP1.45□□□□□ -2.18
CD44-216ENST00000525293 MAP3K4Q9Y6R4 1608 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 STRCP1A6NGW2 1772 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 ANAPC1Q9H1A4 1944 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 IGKV1D-42A0A075B6H8 117 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 TRBV25-1A0A075B6N4 114 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 TRAV7A0A075B6U4 112 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 A0A087WVE0 104 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 IGLV3-32A0A0A0MS00 114 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 IGHV3-49A0A0A0MS15 119 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 IGHV7-4-1A0A0J9YVY3 117 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 A0A1B0GVX0 72 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 SDHAF1A6NFY7 115 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 CHKB-CPT1BH3BT56 60 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 PPYP01298 95 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 CRPP02741 224 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 CISD3P0C7P0 127 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 MGST1P10620 155 aaKnown RBP1.45□□□□□ -2.18
CD44-216ENST00000525293 IFI27P40305 119 aaPredicted RBP1.45□□□□□ -2.18
CD44-216ENST00000525293 UBE2D1P51668 147 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 MIAQ16674 131 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 ASB16-AS1Q495Z4 193 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 C2orf82Q6UX34 121 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 ZNF818PQ6ZRF7 136 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms