RNA–Protein interactions for RNA: ENST00000507784.5

RNF4-209, Transcript of ring finger protein 4, humanhuman

TSL 2

Gene RNF4, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-209ENST00000507784 MAP1LC3AQ9H492 121 aa12.33□□□□□ -0.44
RNF4-209ENST00000507784 NIT2Q9NQR4 276 aa12.33□□□□□ -0.44
RNF4-209ENST00000507784 HHLA3Q9XRX5 114 aa12.33□□□□□ -0.44
RNF4-209ENST00000507784 LAMTOR2Q9Y2Q5 125 aa12.33□□□□□ -0.44
RNF4-209ENST00000507784 TNFRSF18Q9Y5U5 241 aa12.33□□□□□ -0.44
RNF4-209ENST00000507784 Q6ZTC4 211 aa12.32□□□□□ -0.44
RNF4-209ENST00000507784 BAGE3Q86Y29 109 aa12.32□□□□□ -0.44
RNF4-209ENST00000507784 C18orf32Q8TCD1 76 aa12.32□□□□□ -0.44
RNF4-209ENST00000507784 PRADC1Q9BSG0 188 aa12.32□□□□□ -0.44
RNF4-209ENST00000507784 ST20Q9HBF5 79 aa12.32□□□□□ -0.44
RNF4-209ENST00000507784 TRBV6-4A0A1B0GX49 114 aa12.31□□□□□ -0.44
RNF4-209ENST00000507784 PRSS3P2Q8NHM4 247 aa12.31□□□□□ -0.44
RNF4-209ENST00000507784 GAGE12JA6NER3 117 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 CRYBA4P53673 196 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 GAGE1Q13065 139 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 GAGE4Q13068 117 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 GAGE5Q13069 117 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 RHOHQ15669 191 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 GAGE13Q4V321 117 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 NEXN-AS1Q8NBZ9 246 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 ZNRF2Q8NHG8 242 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 DNAJC30Q96LL9 226 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 EDA2RQ9HAV5 297 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 Q9UF83 564 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 PRO0255Q9UI72 69 aa12.3□□□□□ -0.44
RNF4-209ENST00000507784 A0A0J9YY99 117 aa12.29□□□□□ -0.44
RNF4-209ENST00000507784 LOC100131303A0A0U1RQF7 123 aa12.29□□□□□ -0.44
RNF4-209ENST00000507784 PAX4O43316 350 aa12.29□□□□□ -0.44
RNF4-209ENST00000507784 SUMO2P61956 95 aaKnown RBP12.29□□□□□ -0.44
RNF4-209ENST00000507784 RPL36AP83881 106 aaKnown RBP12.29□□□□□ -0.44
RNF4-209ENST00000507784 Q0VG73 95 aa12.29□□□□□ -0.44
RNF4-209ENST00000507784 RPL36ALQ969Q0 106 aaKnown RBP12.29□□□□□ -0.44
RNF4-209ENST00000507784 C20orf78Q9BR46 151 aa12.29□□□□□ -0.44
RNF4-209ENST00000507784 TRBV10-1A0A0K0K1A3 114 aa12.28□□□□□ -0.44
RNF4-209ENST00000507784 S100A6P06703 90 aa12.28□□□□□ -0.44
RNF4-209ENST00000507784 IFI27P40305 119 aaPredicted RBP12.28□□□□□ -0.44
RNF4-209ENST00000507784 NIT1Q86X76 327 aa12.28□□□□□ -0.44
RNF4-209ENST00000507784 TRAV26-1A0A087WT03 109 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 DEFB131BA0A096LNP1 70 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 TRBV6-5A0A0K0K1A5 114 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 SDHAF1A6NFY7 115 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 GYPEP15421 78 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 PMCHP20382 165 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 RNASEKQ6P5S7 137 aaKnown RBP12.27□□□□□ -0.45
RNF4-209ENST00000507784 FA2HQ7L5A8 372 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 NEGR1Q7Z3B1 354 aa12.27□□□□□ -0.45
RNF4-209ENST00000507784 TRAV10A0A0B4J240 114 aa12.26□□□□□ -0.45
RNF4-209ENST00000507784 Q8N8P6 123 aa12.26□□□□□ -0.45
RNF4-209ENST00000507784 DEFB104AQ8WTQ1 72 aa12.26□□□□□ -0.45
RNF4-209ENST00000507784 PHLDA1Q8WV24 401 aaPredicted RBP12.26□□□□□ -0.45
RNF4-209ENST00000507784 SMIM2Q9BVW6 85 aa12.26□□□□□ -0.45
RNF4-209ENST00000507784 TENM3Q9P273 2699 aa12.26□□□□□ -0.45
RNF4-209ENST00000507784 TRBV7-3A0A075B6L6 115 aa12.25□□□□□ -0.45
RNF4-209ENST00000507784 PRSS47A8MTI9 375 aa12.25□□□□□ -0.45
RNF4-209ENST00000507784 VCYO14598 125 aa12.25□□□□□ -0.45
RNF4-209ENST00000507784 TMEM70Q9BUB7 260 aa12.25□□□□□ -0.45
RNF4-209ENST00000507784 NXT2Q9NPJ8 142 aaKnown RBP12.25□□□□□ -0.45
RNF4-209ENST00000507784 IGHV3-38A0A0C4DH36 116 aa12.24□□□□□ -0.45
RNF4-209ENST00000507784 LINC00614P0C842 121 aa12.24□□□□□ -0.45
RNF4-209ENST00000507784 POLR2KP53803 58 aaKnown RBP12.24□□□□□ -0.45
RNF4-209ENST00000507784 VSIG2Q96IQ7 327 aa12.24□□□□□ -0.45
RNF4-209ENST00000507784 HUWE1Q7Z6Z7 4374 aaKnown RBP12.23□□□□□ -0.45
RNF4-209ENST00000507784 I3L3M4 83 aa12.23□□□□□ -0.45
RNF4-209ENST00000507784 TCAPO15273 167 aa12.23□□□□□ -0.45
RNF4-209ENST00000507784 SERF1AO75920 110 aa12.23□□□□□ -0.45
RNF4-209ENST00000507784 DNAH9Q9NYC9 4486 aa12.22□□□□□ -0.45
RNF4-209ENST00000507784 UBE2D3P61077 147 aa12.22□□□□□ -0.45
RNF4-209ENST00000507784 UBE2D2P62837 147 aa12.22□□□□□ -0.45
RNF4-209ENST00000507784 URB1-AS1Q96HZ7 61 aa12.22□□□□□ -0.45
RNF4-209ENST00000507784 KIR2DL4Q99706 377 aa12.22□□□□□ -0.45
RNF4-209ENST00000507784 MEGF8Q7Z7M0 2845 aa12.22□□□□□ -0.45
RNF4-209ENST00000507784 IGLV2-18A0A075B6J9 118 aa12.21□□□□□ -0.45
RNF4-209ENST00000507784 A0A096LPF7 62 aa12.21□□□□□ -0.45
RNF4-209ENST00000507784 NUPR1O60356 82 aa12.21□□□□□ -0.45
RNF4-209ENST00000507784 FCER1GP30273 86 aa12.21□□□□□ -0.45
RNF4-209ENST00000507784 SNRPEP62304 92 aaKnown RBP12.21□□□□□ -0.45
RNF4-209ENST00000507784 RPL32P62910 135 aaKnown RBP12.21□□□□□ -0.45
RNF4-209ENST00000507784 CHCHD1Q96BP2 118 aaKnown RBP12.21□□□□□ -0.45
RNF4-209ENST00000507784 ICOSQ9Y6W8 199 aa12.21□□□□□ -0.45
RNF4-209ENST00000507784 TRBV27A0A0K0K1C4 114 aa12.2□□□□□ -0.46
RNF4-209ENST00000507784 HSBP1O75506 76 aa12.2□□□□□ -0.46
RNF4-209ENST00000507784 MRPL23Q16540 153 aaKnown RBP12.2□□□□□ -0.46
RNF4-209ENST00000507784 ATP6V0E2Q8NHE4 81 aa12.2□□□□□ -0.46
RNF4-209ENST00000507784 AP5S1Q9NUS5 200 aa12.2□□□□□ -0.46
RNF4-209ENST00000507784 NUDT3O95989 172 aa12.19□□□□□ -0.46
RNF4-209ENST00000507784 LINC00310P59036 64 aa12.19□□□□□ -0.46
RNF4-209ENST00000507784 COTL1Q14019 142 aa12.19□□□□□ -0.46
RNF4-209ENST00000507784 LAGE3Q14657 143 aa12.19□□□□□ -0.46
RNF4-209ENST00000507784 PDZD11Q5EBL8 140 aa12.19□□□□□ -0.46
RNF4-209ENST00000507784 COA6Q5JTJ3 125 aaKnown RBP12.19□□□□□ -0.46
RNF4-209ENST00000507784 DAZ4Q86SG3 579 aaKnown RBP12.19□□□□□ -0.46
RNF4-209ENST00000507784 DAZ3Q9NR90 486 aaKnown RBP12.19□□□□□ -0.46
RNF4-209ENST00000507784 PMCHL1Q16048 86 aa12.18□□□□□ -0.46
RNF4-209ENST00000507784 TSHBP01222 138 aa12.17□□□□□ -0.46
RNF4-209ENST00000507784 FAM19A2Q8N3H0 131 aa12.17□□□□□ -0.46
RNF4-209ENST00000507784 IGLL5B9A064 214 aa12.16□□□□□ -0.46
RNF4-209ENST00000507784 H3BNG1 76 aa12.16□□□□□ -0.46
RNF4-209ENST00000507784 LINC00694P0DN24 101 aa12.16□□□□□ -0.46
RNF4-209ENST00000507784 ORMDL2Q53FV1 153 aa12.16□□□□□ -0.46
RNF4-209ENST00000507784 LINC01546A6NGU7 62 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms