RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 IGHV3-64A0A075B6Q5 118 aa9.63□□□□□ -0.87
PTPN7-217ENST00000495688 B4DSR2 109 aa9.63□□□□□ -0.87
PTPN7-217ENST00000495688 P0DMU3 169 aa9.63□□□□□ -0.87
PTPN7-217ENST00000495688 FAM231AP0DMU4 169 aa9.63□□□□□ -0.87
PTPN7-217ENST00000495688 FAM231CP0DMU5 169 aa9.63□□□□□ -0.87
PTPN7-217ENST00000495688 HTN1P15515 57 aa9.63□□□□□ -0.87
PTPN7-217ENST00000495688 SMAGPQ0VAQ4 97 aa9.63□□□□□ -0.87
PTPN7-217ENST00000495688 GAGE12HA6NDE8 117 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 PRM2P04554 102 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 SMCPP49901 116 aaPredicted RBP9.62□□□□□ -0.87
PTPN7-217ENST00000495688 HERVK_113P61574 105 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 SNRPD3P62318 126 aaKnown RBP9.62□□□□□ -0.87
PTPN7-217ENST00000495688 TMEM141Q96I45 108 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 AMELXQ99217 191 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 EPG5Q9HCE0 2579 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 K7EQG2 157 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 PSMB2P49721 201 aa9.62□□□□□ -0.87
PTPN7-217ENST00000495688 IGHV1OR15-1A0A075B7D0 117 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 TRBV6-5A0A0K0K1A5 114 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 NDUFA11Q86Y39 141 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 IGHV3-73A0A0B4J1V6 119 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 TGFAP01135 160 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 PAPPA-AS1Q5QFB9 102 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 SAMD13Q5VXD3 122 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 ZNF580Q9UK33 172 aa9.61□□□□□ -0.87
PTPN7-217ENST00000495688 J3QQQ9 107 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 IGHV3-30P01768 117 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 RBMY1A1P0DJD3 496 aaKnown RBP9.6□□□□□ -0.87
PTPN7-217ENST00000495688 RBMY1CP0DJD4 496 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 IGHV3-30-5P0DP03 117 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 RBMY1FQ15415 496 aaKnown RBP9.6□□□□□ -0.87
PTPN7-217ENST00000495688 ZNF418Q8TF45 676 aaPredicted RBP9.6□□□□□ -0.87
PTPN7-217ENST00000495688 PTH2Q96A98 100 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 ZNF462Q96JM2 2506 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 SETD2Q9BYW2 2564 aaPredicted RBP9.6□□□□□ -0.87
PTPN7-217ENST00000495688 CFC1BP0CG36 223 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 CFC1P0CG37 223 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 PROK1P58294 105 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 CFAP126Q5VTH2 177 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 SLC25A29Q8N8R3 303 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 SYT8Q8NBV8 401 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 NAV2Q8IVL1 2488 aa9.6□□□□□ -0.87
PTPN7-217ENST00000495688 DLX4Q92988 240 aaPredicted RBP9.59□□□□□ -0.87
PTPN7-217ENST00000495688 SIGMAR1Q99720 223 aa9.59□□□□□ -0.87
PTPN7-217ENST00000495688 Q9UF83 564 aa9.59□□□□□ -0.87
PTPN7-217ENST00000495688 NOTCH3Q9UM47 2321 aa9.59□□□□□ -0.87
PTPN7-217ENST00000495688 Q5PR19 223 aa9.59□□□□□ -0.87
PTPN7-217ENST00000495688 J3QR89 54 aa9.59□□□□□ -0.88
PTPN7-217ENST00000495688 UBE2D3P61077 147 aa9.59□□□□□ -0.88
PTPN7-217ENST00000495688 UBE2D2P62837 147 aa9.59□□□□□ -0.88
PTPN7-217ENST00000495688 NFE4Q86UQ8 179 aa9.59□□□□□ -0.88
PTPN7-217ENST00000495688 A0A0J9YXV3 536 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 HOXD3P31249 432 aaPredicted RBP9.58□□□□□ -0.88
PTPN7-217ENST00000495688 DEFB136Q30KP8 78 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 TRPT1Q86TN4 253 aaKnown RBP9.58□□□□□ -0.88
PTPN7-217ENST00000495688 C20orf203Q8NBC4 194 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 ODF3Q96PU9 254 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 KNCNA6PVL3 124 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 LGALS3P17931 250 aaKnown RBP9.58□□□□□ -0.88
PTPN7-217ENST00000495688 NSUN5P1Q3KNT7 163 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 HIST2H2BDQ6DRA6 164 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 CEMP1Q6PRD7 247 aaPredicted RBP9.58□□□□□ -0.88
PTPN7-217ENST00000495688 C18orf65Q6ZTR6 163 aa9.58□□□□□ -0.88
PTPN7-217ENST00000495688 SONP18583 2426 aaKnown RBP9.57□□□□□ -0.88
PTPN7-217ENST00000495688 TCL1BO95988 128 aa9.57□□□□□ -0.88
PTPN7-217ENST00000495688 TMEM223A0PJW6 202 aa9.57□□□□□ -0.88
PTPN7-217ENST00000495688 EIF4EBP3O60516 100 aaPredicted RBP9.57□□□□□ -0.88
PTPN7-217ENST00000495688 RNASE13Q5GAN3 156 aaKnown RBP9.57□□□□□ -0.88
PTPN7-217ENST00000495688 SPATA25Q9BR10 227 aa9.57□□□□□ -0.88
PTPN7-217ENST00000495688 WNK1Q9H4A3 2382 aa9.56□□□□□ -0.88
PTPN7-217ENST00000495688 ZNF22P17026 224 aaPredicted RBP9.56□□□□□ -0.88
PTPN7-217ENST00000495688 FOXI1Q12951 378 aa9.56□□□□□ -0.88
PTPN7-217ENST00000495688 NACAE9PAV3 2078 aa9.56□□□□□ -0.88
PTPN7-217ENST00000495688 IGLV4-3A0A075B6K6 122 aa9.56□□□□□ -0.88
PTPN7-217ENST00000495688 ADARB2-AS1A8MUL3 147 aa9.56□□□□□ -0.88
PTPN7-217ENST00000495688 I3L3M4 83 aa9.56□□□□□ -0.88
PTPN7-217ENST00000495688 RAX2Q96IS3 184 aa9.56□□□□□ -0.88
PTPN7-217ENST00000495688 A4D1N5 150 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 RHOHQ15669 191 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 C10orf126Q8N4M7 172 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 C1QTNF4Q9BXJ3 329 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 PRRC2AP48634 2157 aaKnown RBP9.55□□□□□ -0.88
PTPN7-217ENST00000495688 TRAV2A0A0B4J234 112 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 RHODO00212 210 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 TCTEX1D4Q5JR98 221 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 FAM104AQ969W3 186 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 DUX3Q96PT4 197 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 VCX2Q9H322 139 aa9.55□□□□□ -0.88
PTPN7-217ENST00000495688 BEX4Q9NWD9 120 aaPredicted RBP9.55□□□□□ -0.88
PTPN7-217ENST00000495688 H7C2G1 150 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 SLURP1P55000 103 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 LINC01356Q8N9X3 169 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 C2CD3Q4AC94 2353 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 DEFB131AP59861 70 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 FHL3Q13643 280 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 SPXQ9BT56 116 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 PRO1854Q9UHT4 67 aa9.54□□□□□ -0.88
PTPN7-217ENST00000495688 LEPROTO15243 131 aa9.53□□□□□ -0.88
PTPN7-217ENST00000495688 GATA3P23771 443 aa9.53□□□□□ -0.88
PTPN7-217ENST00000495688 RBMY1BA6NDE4 496 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms