RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GATA3P23771 443 aa12.29□□□□□ -0.44
CCDC88B-210ENST00000494566 ZNF56Q15929 161 aa12.29□□□□□ -0.44
CCDC88B-210ENST00000494566 SUMO4Q6EEV6 95 aa12.29□□□□□ -0.44
CCDC88B-210ENST00000494566 ID1P41134 155 aa12.28□□□□□ -0.44
CCDC88B-210ENST00000494566 DSCR9P59020 149 aa12.28□□□□□ -0.44
CCDC88B-210ENST00000494566 SPINK13Q1W4C9 94 aa12.28□□□□□ -0.44
CCDC88B-210ENST00000494566 TENM4Q6N022 2769 aa12.28□□□□□ -0.44
CCDC88B-210ENST00000494566 FLNAP21333 2647 aaKnown RBP12.28□□□□□ -0.44
CCDC88B-210ENST00000494566 KLLNB2CW77 178 aa12.27□□□□□ -0.44
CCDC88B-210ENST00000494566 NPC2P61916 151 aa12.27□□□□□ -0.44
CCDC88B-210ENST00000494566 ACANP16112 2415 aa12.27□□□□□ -0.45
CCDC88B-210ENST00000494566 K7EMT4 169 aa12.27□□□□□ -0.45
CCDC88B-210ENST00000494566 IGHV4-31P0DP07 118 aa12.27□□□□□ -0.45
CCDC88B-210ENST00000494566 APRG1Q8IVJ8 170 aa12.27□□□□□ -0.45
CCDC88B-210ENST00000494566 VPREB3Q9UKI3 123 aa12.27□□□□□ -0.45
CCDC88B-210ENST00000494566 SDHAF1A6NFY7 115 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 F8W1H4 67 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 TSPAN13O95857 204 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 SCGB1C2P0DMR2 95 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 SMCPP49901 116 aaPredicted RBP12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 SYT8Q8NBV8 401 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 PRSS47A8MTI9 375 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 P0DMU3 169 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 FAM231AP0DMU4 169 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 FAM231CP0DMU5 169 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 HOXD3P31249 432 aaPredicted RBP12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 NFE4Q86UQ8 179 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 ZNF702PQ9H963 129 aa12.26□□□□□ -0.45
CCDC88B-210ENST00000494566 CEMP1Q6PRD7 247 aaPredicted RBP12.25□□□□□ -0.45
CCDC88B-210ENST00000494566 ZNRF2Q8NHG8 242 aa12.25□□□□□ -0.45
CCDC88B-210ENST00000494566 KNCNA6PVL3 124 aa12.25□□□□□ -0.45
CCDC88B-210ENST00000494566 SLURP1P55000 103 aa12.25□□□□□ -0.45
CCDC88B-210ENST00000494566 ZNF843Q8N446 348 aa12.25□□□□□ -0.45
CCDC88B-210ENST00000494566 LINC00315P59091 139 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 KIR2DL4Q99706 377 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 IGLV4-69A0A075B6H9 119 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 PRO0461Q9UI25 63 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 MTORP42345 2549 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 TRAV2A0A0B4J234 112 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 A0A0J9YX75 114 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 PROK1P58294 105 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 KHDC1LQ5JSQ8 128 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 KIF25-AS1Q9Y6Z4 181 aa12.24□□□□□ -0.45
CCDC88B-210ENST00000494566 TRAV12-1A0A0B4J245 112 aa12.23□□□□□ -0.45
CCDC88B-210ENST00000494566 SNRPD3P62318 126 aaKnown RBP12.23□□□□□ -0.45
CCDC88B-210ENST00000494566 Q8N1Y9 231 aa12.23□□□□□ -0.45
CCDC88B-210ENST00000494566 Q9UF83 564 aa12.23□□□□□ -0.45
CCDC88B-210ENST00000494566 K7EQG2 157 aa12.22□□□□□ -0.45
CCDC88B-210ENST00000494566 HIST2H2BCQ6DN03 193 aa12.22□□□□□ -0.45
CCDC88B-210ENST00000494566 Q6YL49 198 aa12.22□□□□□ -0.45
CCDC88B-210ENST00000494566 Q96MF0 132 aa12.22□□□□□ -0.45
CCDC88B-210ENST00000494566 FHL3Q13643 280 aa12.22□□□□□ -0.45
CCDC88B-210ENST00000494566 TRPT1Q86TN4 253 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-210ENST00000494566 A8MZ25 164 aa12.21□□□□□ -0.45
CCDC88B-210ENST00000494566 J3QR89 54 aa12.21□□□□□ -0.45
CCDC88B-210ENST00000494566 TCL1BO95988 128 aa12.21□□□□□ -0.45
CCDC88B-210ENST00000494566 J3QLI3 93 aa12.21□□□□□ -0.46
CCDC88B-210ENST00000494566 TCTEX1D4Q5JR98 221 aa12.21□□□□□ -0.46
CCDC88B-210ENST00000494566 A0A0J9YY99 117 aa12.2□□□□□ -0.46
CCDC88B-210ENST00000494566 MT-ATP8P03928 68 aa12.2□□□□□ -0.46
CCDC88B-210ENST00000494566 MED14OSP0DP75 135 aa12.2□□□□□ -0.46
CCDC88B-210ENST00000494566 TAL2Q16559 108 aa12.2□□□□□ -0.46
CCDC88B-210ENST00000494566 C11orf44Q8N8P7 122 aa12.2□□□□□ -0.46
CCDC88B-210ENST00000494566 DLX4Q92988 240 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-210ENST00000494566 IGHV3-16A0A0C4DH30 117 aa12.19□□□□□ -0.46
CCDC88B-210ENST00000494566 PMVKQ15126 192 aa12.19□□□□□ -0.46
CCDC88B-210ENST00000494566 ITPR2Q14571 2701 aa12.19□□□□□ -0.46
CCDC88B-210ENST00000494566 A0A0J9YXV3 536 aa12.19□□□□□ -0.46
CCDC88B-210ENST00000494566 Q1RN00 199 aa12.19□□□□□ -0.46
CCDC88B-210ENST00000494566 TRBV7-9A0A0J9YWB2 115 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 CFC1BP0CG36 223 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 CFC1P0CG37 223 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 RBMY1A1P0DJD3 496 aaKnown RBP12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 RBMY1CP0DJD4 496 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 FOXI1Q12951 378 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 RBMY1FQ15415 496 aaKnown RBP12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 SPXQ9BT56 116 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 IGIPA6NJ69 53 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 NXPH4O95158 308 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 FSHBP01225 129 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 LGALS3P17931 250 aaKnown RBP12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 Q6ZSV7 163 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 NDUFA11Q86Y39 141 aa12.18□□□□□ -0.46
CCDC88B-210ENST00000494566 PRSS2P07478 247 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 DEFB113Q30KQ7 82 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 DEFB131AP59861 70 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 ELANEP08246 267 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 HERVK_113P61574 105 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 ZNF876PQ49A33 203 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 CFAP126Q5VTH2 177 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 UBE2E2Q96LR5 201 aa12.17□□□□□ -0.46
CCDC88B-210ENST00000494566 IGHV1OR15-1A0A075B7D0 117 aa12.16□□□□□ -0.46
CCDC88B-210ENST00000494566 TRAV8-3A0A0A6YYJ7 113 aa12.16□□□□□ -0.46
CCDC88B-210ENST00000494566 A4D1N5 150 aa12.16□□□□□ -0.46
CCDC88B-210ENST00000494566 J3QQQ9 107 aa12.16□□□□□ -0.46
CCDC88B-210ENST00000494566 TMEM238LA0A1B0GVL6 79 aa12.16□□□□□ -0.46
CCDC88B-210ENST00000494566 A6NJY4 79 aa12.16□□□□□ -0.46
CCDC88B-210ENST00000494566 IGHV3-38A0A0C4DH36 116 aa12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 A0A0U1RRA0 63 aa12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 VCYO14598 125 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms