RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 NHP2Q9NX24 153 aaKnown RBP10.28□□□□□ -0.76
VCP-207ENST00000493886 ITPR3Q14573 2671 aa10.28□□□□□ -0.76
VCP-207ENST00000493886 NDUFV3P56181 108 aaKnown RBP10.27□□□□□ -0.76
VCP-207ENST00000493886 RPL39LQ96EH5 51 aaKnown RBP10.27□□□□□ -0.76
VCP-207ENST00000493886 NBPF19A0A087WUL8 3843 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 J3QKU1 62 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 GNRH2O43555 120 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 MGPP08493 103 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 DEFB136Q30KP8 78 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 C14orf178Q8N769 122 aaPredicted RBP10.27□□□□□ -0.77
VCP-207ENST00000493886 CHD6Q8TD26 2715 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 TENM4Q6N022 2769 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 LINC01546A6NGU7 62 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 H3BMG7 143 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 MED14OSP0DP75 135 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 TMEM86BQ8N661 226 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 MAPKAPK5-AS1Q8N8E1 139 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 PHLDA3Q9Y5J5 127 aa10.27□□□□□ -0.77
VCP-207ENST00000493886 SLURP1P55000 103 aa10.26□□□□□ -0.77
VCP-207ENST00000493886 ZMAT4Q9H898 229 aa10.26□□□□□ -0.77
VCP-207ENST00000493886 MUC4Q99102 2169 aa10.26□□□□□ -0.77
VCP-207ENST00000493886 ZNF469Q96JG9 3925 aaPredicted RBP10.25□□□□□ -0.77
VCP-207ENST00000493886 A0A0J9YX75 114 aa10.25□□□□□ -0.77
VCP-207ENST00000493886 APOMO95445 188 aa10.25□□□□□ -0.77
VCP-207ENST00000493886 RNASE3P12724 160 aaKnown RBP10.25□□□□□ -0.77
VCP-207ENST00000493886 DNAJC30Q96LL9 226 aa10.25□□□□□ -0.77
VCP-207ENST00000493886 CCDC168Q8NDH2 2452 aa10.25□□□□□ -0.77
VCP-207ENST00000493886 F8W1H4 67 aa10.25□□□□□ -0.77
VCP-207ENST00000493886 AMTNQ6UX39 209 aa10.25□□□□□ -0.77
VCP-207ENST00000493886 A0A1B0GWB2 263 aa10.24□□□□□ -0.77
VCP-207ENST00000493886 ATP5LO75964 103 aa10.24□□□□□ -0.77
VCP-207ENST00000493886 SMIM13P0DJ93 91 aa10.24□□□□□ -0.77
VCP-207ENST00000493886 ODF3Q96PU9 254 aa10.24□□□□□ -0.77
VCP-207ENST00000493886 MYO9AB2RTY4 2548 aa10.24□□□□□ -0.77
VCP-207ENST00000493886 SONP18583 2426 aaKnown RBP10.24□□□□□ -0.77
VCP-207ENST00000493886 TRAV12-3A0A0B4J271 114 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 LINC01619G3V211 115 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 IGKV3-20P01619 116 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 TTC32Q5I0X7 151 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 KHDC1LQ5JSQ8 128 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 SMIM2Q9BVW6 85 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 EDA2RQ9HAV5 297 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 Q6ZSV7 163 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 KIR2DL5BQ8NHK3 375 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 C4orf3Q8WVX3 66 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 DPH3P1Q9H4G8 78 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 DNAJC9-AS1A6NH13 148 aa10.23□□□□□ -0.77
VCP-207ENST00000493886 EMP1P54849 157 aa10.22□□□□□ -0.77
VCP-207ENST00000493886 RASL10AQ92737 203 aa10.22□□□□□ -0.77
VCP-207ENST00000493886 DUX3Q96PT4 197 aa10.22□□□□□ -0.77
VCP-207ENST00000493886 FOXI1Q12951 378 aa10.22□□□□□ -0.77
VCP-207ENST00000493886 SCGB3A1Q96QR1 104 aa10.22□□□□□ -0.77
VCP-207ENST00000493886 FLNAP21333 2647 aaKnown RBP10.21□□□□□ -0.77
VCP-207ENST00000493886 SUMO2P61956 95 aaKnown RBP10.21□□□□□ -0.77
VCP-207ENST00000493886 KMT2BQ9UMN6 2715 aaPredicted RBP10.21□□□□□ -0.78
VCP-207ENST00000493886 TRAV12-2A0A075B6T6 113 aa10.21□□□□□ -0.78
VCP-207ENST00000493886 DUSP14O95147 198 aaKnown RBP10.21□□□□□ -0.78
VCP-207ENST00000493886 NXPH4O95158 308 aa10.21□□□□□ -0.78
VCP-207ENST00000493886 CD7P09564 240 aa10.21□□□□□ -0.78
VCP-207ENST00000493886 KRTAP1-1Q07627 177 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 CEND1Q8N111 149 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 KLHL30-AS1Q8NEE0 82 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 PEMTQ9UBM1 199 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 SPINK13Q1W4C9 94 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 HIST1H4GQ99525 98 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 JPT2Q9H910 190 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 NOTCH3Q9UM47 2321 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 GAGE2BQ13066 116 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 GAGE2EQ4V326 116 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 HIST2H2BDQ6DRA6 164 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 ESM1Q9NQ30 184 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 HIGD1BQ9P298 99 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 GAGE2DQ9UEU5 116 aa10.2□□□□□ -0.78
VCP-207ENST00000493886 C9JAW5 83 aa10.19□□□□□ -0.78
VCP-207ENST00000493886 IFITM1P13164 125 aa10.19□□□□□ -0.78
VCP-207ENST00000493886 GAGE13Q4V321 117 aa10.19□□□□□ -0.78
VCP-207ENST00000493886 DLX4Q92988 240 aaPredicted RBP10.19□□□□□ -0.78
VCP-207ENST00000493886 A0A1W2PRX2 142 aa10.18□□□□□ -0.78
VCP-207ENST00000493886 F8VRH5 84 aa10.18□□□□□ -0.78
VCP-207ENST00000493886 RHODO00212 210 aa10.18□□□□□ -0.78
VCP-207ENST00000493886 C2orf66Q6UXQ4 117 aa10.18□□□□□ -0.78
VCP-207ENST00000493886 TMEM101Q96IK0 257 aa10.18□□□□□ -0.78
VCP-207ENST00000493886 TMEM126AQ9H061 195 aa10.18□□□□□ -0.78
VCP-207ENST00000493886 PDZD2O15018 2839 aa10.18□□□□□ -0.78
VCP-207ENST00000493886 PHLDA1Q8WV24 401 aaPredicted RBP10.18□□□□□ -0.78
VCP-207ENST00000493886 A0A087WWL8 130 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 PLNP26678 52 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 OR13C6PQ8NH95 151 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 IGHV3-16A0A0C4DH30 117 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 H7C1H1 209 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 DEFB131AP59861 70 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 SFTA2Q6UW10 78 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 NFE4Q86UQ8 179 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 TMEM61Q8N0U2 210 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 KIF25-AS1Q9Y6Z4 181 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 KNCNA6PVL3 124 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 POM121L12Q8N7R1 296 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 C9orf85Q96MD7 179 aa10.17□□□□□ -0.78
VCP-207ENST00000493886 IGHV1OR15-1A0A075B7D0 117 aa10.16□□□□□ -0.78
VCP-207ENST00000493886 TRAV2A0A0B4J234 112 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms