RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	PHOX2A	O14813	284 aa		11.18	□□□□□ -0.62
NUP50-218	ENST00000493456	UBE2G1	P62253	170 aa		11.18	□□□□□ -0.62
NUP50-218	ENST00000493456	PLAC8	Q9NZF1	115 aa		11.18	□□□□□ -0.62
NUP50-218	ENST00000493456	TRAV8-4	A0A0B4J246	113 aa		11.17	□□□□□ -0.62
NUP50-218	ENST00000493456	TRBV6-1	A0A0K0K1D8	114 aa		11.17	□□□□□ -0.62
NUP50-218	ENST00000493456	FAM74A7	A6NL05	159 aa		11.17	□□□□□ -0.62
NUP50-218	ENST00000493456		P01737	135 aa		11.17	□□□□□ -0.62
NUP50-218	ENST00000493456	CHTF8	P0CG12	524 aa		11.17	□□□□□ -0.62
NUP50-218	ENST00000493456	GAGE6	Q13070	117 aa		11.17	□□□□□ -0.62
NUP50-218	ENST00000493456	DERL1	Q9BUN8	251 aa		11.17	□□□□□ -0.62
NUP50-218	ENST00000493456	CTXND1	A0A1B0GTU2	59 aa		11.16	□□□□□ -0.62
NUP50-218	ENST00000493456	REG3A	Q06141	175 aa		11.16	□□□□□ -0.62
NUP50-218	ENST00000493456	AQP10	Q96PS8	301 aa		11.16	□□□□□ -0.62
NUP50-218	ENST00000493456	IGLV10-54	A0A075B6I4	117 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456		A6NHS1	94 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	LTA	P01374	205 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	CXCL1	P09341	107 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	GZMB	P10144	247 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	IQCJ	Q1A5X6	159 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	OR10AG1	Q8NH19	301 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	TCEAL7	Q9BRU2	100 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	ZNF471	Q9BX82	626 aa	Predicted RBP	11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	KIF25-AS1	Q9Y6Z4	181 aa		11.15	□□□□□ -0.62
NUP50-218	ENST00000493456	ZNF726P1	Q15940	193 aa		11.14	□□□□□ -0.63
NUP50-218	ENST00000493456	WDR73	Q6P4I2	378 aa		11.14	□□□□□ -0.63
NUP50-218	ENST00000493456	IGHV1-24	A0A0C4DH33	117 aa		11.13	□□□□□ -0.63
NUP50-218	ENST00000493456		F5H697	171 aa		11.13	□□□□□ -0.63
NUP50-218	ENST00000493456	SLPI	P03973	132 aa		11.13	□□□□□ -0.63
NUP50-218	ENST00000493456	IFITM3	Q01628	133 aa		11.13	□□□□□ -0.63
NUP50-218	ENST00000493456		A0A0J9YXV3	536 aa		11.12	□□□□□ -0.63
NUP50-218	ENST00000493456	SNAI2	O43623	268 aa		11.12	□□□□□ -0.63
NUP50-218	ENST00000493456	PRR3	P79522	188 aa	Known RBP	11.12	□□□□□ -0.63
NUP50-218	ENST00000493456	SMIM17	P0DL12	118 aa		11.11	□□□□□ -0.63
NUP50-218	ENST00000493456	SPANXN1	Q5VSR9	72 aa		11.11	□□□□□ -0.63
NUP50-218	ENST00000493456	C20orf203	Q8NBC4	194 aa		11.11	□□□□□ -0.63
NUP50-218	ENST00000493456	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.11	□□□□□ -0.63
NUP50-218	ENST00000493456		A0A1B0GUV1	79 aa		11.1	□□□□□ -0.63
NUP50-218	ENST00000493456	OR5AL1	P0C617	328 aa		11.1	□□□□□ -0.63
NUP50-218	ENST00000493456	AKR1C3	P42330	323 aa		11.1	□□□□□ -0.63
NUP50-218	ENST00000493456	FHIT	P49789	147 aa		11.1	□□□□□ -0.63
NUP50-218	ENST00000493456	GTSF1	Q8WW33	167 aa		11.1	□□□□□ -0.63
NUP50-218	ENST00000493456	ODF1	Q14990	250 aa		11.09	□□□□□ -0.63
NUP50-218	ENST00000493456	REG3G	Q6UW15	175 aa		11.09	□□□□□ -0.63
NUP50-218	ENST00000493456	AP1S3	Q96PC3	154 aa		11.09	□□□□□ -0.63
NUP50-218	ENST00000493456	BORCS7-ASMT	A0A0B4J1R7	106 aa		11.08	□□□□□ -0.64
NUP50-218	ENST00000493456	NDUFS6	O75380	124 aa	Known RBP	11.08	□□□□□ -0.64
NUP50-218	ENST00000493456	DEFA1	P59665	94 aa		11.08	□□□□□ -0.64
NUP50-218	ENST00000493456	DEFA3	P59666	94 aa		11.08	□□□□□ -0.64
NUP50-218	ENST00000493456	KRTAP10-8	P60410	259 aa		11.08	□□□□□ -0.64
NUP50-218	ENST00000493456	COX6A2	Q02221	97 aa		11.08	□□□□□ -0.64
NUP50-218	ENST00000493456	MAJIN	Q3KP22	176 aa		11.07	□□□□□ -0.64
NUP50-218	ENST00000493456	AKR1C8P	Q5T2L2	129 aa		11.07	□□□□□ -0.64
NUP50-218	ENST00000493456	RPL7L1	Q6DKI1	246 aa	Known RBP	11.07	□□□□□ -0.64
NUP50-218	ENST00000493456	CFAP161	Q6P656	301 aa		11.07	□□□□□ -0.64
NUP50-218	ENST00000493456	SPINK6	Q6UWN8	80 aa		11.07	□□□□□ -0.64
NUP50-218	ENST00000493456	STOML3	Q8TAV4	291 aa		11.07	□□□□□ -0.64
NUP50-218	ENST00000493456	TMEM243	Q9BU79	118 aa		11.07	□□□□□ -0.64
NUP50-218	ENST00000493456	IGLV4-60	A0A075B6I1	120 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	MUC21	A0A0G2JKD1	596 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	MUC21	A0A140T8X8	626 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	MAP1LC3B2	A6NCE7	125 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456		H7C1H1	209 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	GAS8-AS1	O95177	125 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	RPS10	P46783	165 aa	Known RBP	11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	RAB5C	P51148	216 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	CST9LP1	Q5W188	147 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	C15orf56	Q8N910	161 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	MAP1LC3B	Q9GZQ8	125 aa		11.06	□□□□□ -0.64
NUP50-218	ENST00000493456	LPA	P08519	4548 aa		11.05	□□□□□ -0.64
NUP50-218	ENST00000493456	S100A9	P06702	114 aa	Known RBP	11.05	□□□□□ -0.64
NUP50-218	ENST00000493456	STPG4	Q8N801	248 aa		11.05	□□□□□ -0.64
NUP50-218	ENST00000493456	INO80E	Q8NBZ0	244 aa	Predicted RBP	11.05	□□□□□ -0.64
NUP50-218	ENST00000493456	GFRA4	Q9GZZ7	299 aa		11.05	□□□□□ -0.64
NUP50-218	ENST00000493456	IGKV2-24	A0A0C4DH68	120 aa		11.04	□□□□□ -0.64
NUP50-218	ENST00000493456		M0QY20	66 aa		11.04	□□□□□ -0.64
NUP50-218	ENST00000493456	UBE2L6	O14933	153 aa		11.03	□□□□□ -0.64
NUP50-218	ENST00000493456	SULT1A2	P50226	295 aa		11.03	□□□□□ -0.64
NUP50-218	ENST00000493456	PRSS3P2	Q8NHM4	247 aa		11.03	□□□□□ -0.64
NUP50-218	ENST00000493456	PGLYRP4	Q96LB8	373 aa		11.03	□□□□□ -0.64
NUP50-218	ENST00000493456	MLST8	Q9BVC4	326 aa		11.03	□□□□□ -0.64
NUP50-218	ENST00000493456	ALG5	Q9Y673	324 aa		11.03	□□□□□ -0.64
NUP50-218	ENST00000493456	MGP	P08493	103 aa		11.02	□□□□□ -0.65
NUP50-218	ENST00000493456	SST	P61278	116 aa		11.02	□□□□□ -0.65
NUP50-218	ENST00000493456	LYPD6B	Q8NI32	183 aa		11.02	□□□□□ -0.65
NUP50-218	ENST00000493456	LINC00474	Q9P2X8	69 aa		11.02	□□□□□ -0.65
NUP50-218	ENST00000493456	GAGE12H	A6NDE8	117 aa		11.01	□□□□□ -0.65
NUP50-218	ENST00000493456	SUMO4	Q6EEV6	95 aa		11.01	□□□□□ -0.65
NUP50-218	ENST00000493456	BAGE2	Q86Y30	109 aa		11.01	□□□□□ -0.65
NUP50-218	ENST00000493456	PKIG	Q9Y2B9	76 aa		11.01	□□□□□ -0.65
NUP50-218	ENST00000493456	NKX2-5	P52952	324 aa	Predicted RBP	11	□□□□□ -0.65
NUP50-218	ENST00000493456	HIGD2B	Q4VC39	106 aa		11	□□□□□ -0.65
NUP50-218	ENST00000493456	PAGE4	O60829	102 aa		10.99	□□□□□ -0.65
NUP50-218	ENST00000493456		Q5BKY6	102 aa		10.99	□□□□□ -0.65
NUP50-218	ENST00000493456		A0A096LNI7	61 aa		10.98	□□□□□ -0.65
NUP50-218	ENST00000493456	GVQW2	A0A096LPI5	108 aa	Predicted RBP	10.98	□□□□□ -0.65
NUP50-218	ENST00000493456	SCO2	A0A1W2PP80	73 aa		10.98	□□□□□ -0.65
NUP50-218	ENST00000493456	SRSF9	Q13242	221 aa	Known RBP eCLIP	10.98	□□□□□ -0.65
NUP50-218	ENST00000493456	RASL11A	Q6T310	242 aa		10.98	□□□□□ -0.65
NUP50-218	ENST00000493456		Q6ZRP5	223 aa		10.98	□□□□□ -0.65
NUP50-218	ENST00000493456	MED28	Q9H204	178 aa		10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 166.7 ms