RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 GAGE13Q4V321 117 aa11.99□□□□□ -0.49
LIME1-208ENST00000493265 FAM104BQ5XKR9 115 aa11.99□□□□□ -0.49
LIME1-208ENST00000493265 FAM210BQ96KR6 192 aa11.99□□□□□ -0.49
LIME1-208ENST00000493265 ICOSQ9Y6W8 199 aa11.99□□□□□ -0.49
LIME1-208ENST00000493265 NCR2O95944 276 aa11.98□□□□□ -0.49
LIME1-208ENST00000493265 MRPL51Q4U2R6 128 aaKnown RBP11.98□□□□□ -0.49
LIME1-208ENST00000493265 GATD1Q8NB37 220 aa11.98□□□□□ -0.49
LIME1-208ENST00000493265 H7C1H1 209 aa11.97□□□□□ -0.49
LIME1-208ENST00000493265 M0QY20 66 aa11.97□□□□□ -0.49
LIME1-208ENST00000493265 TMEM136Q6ZRR5 245 aa11.97□□□□□ -0.49
LIME1-208ENST00000493265 ZNRF2Q8NHG8 242 aa11.97□□□□□ -0.49
LIME1-208ENST00000493265 GAS8-AS1O95177 125 aa11.96□□□□□ -0.49
LIME1-208ENST00000493265 SRIP30626 198 aa11.96□□□□□ -0.49
LIME1-208ENST00000493265 RASL11AQ6T310 242 aa11.96□□□□□ -0.49
LIME1-208ENST00000493265 C15orf53Q8NAA6 179 aa11.96□□□□□ -0.49
LIME1-208ENST00000493265 NEXN-AS1Q8NBZ9 246 aa11.96□□□□□ -0.49
LIME1-208ENST00000493265 RPL39LQ96EH5 51 aaKnown RBP11.96□□□□□ -0.49
LIME1-208ENST00000493265 APLNQ9ULZ1 77 aa11.96□□□□□ -0.49
LIME1-208ENST00000493265 H3BNG1 76 aa11.95□□□□□ -0.5
LIME1-208ENST00000493265 CKS2P33552 79 aa11.95□□□□□ -0.5
LIME1-208ENST00000493265 RPL36AP83881 106 aaKnown RBP11.95□□□□□ -0.5
LIME1-208ENST00000493265 MRPL23Q16540 153 aaKnown RBP11.95□□□□□ -0.5
LIME1-208ENST00000493265 RPL36ALQ969Q0 106 aaKnown RBP11.95□□□□□ -0.5
LIME1-208ENST00000493265 MRAP2Q96G30 205 aa11.95□□□□□ -0.5
LIME1-208ENST00000493265 YPEL4Q96NS1 127 aa11.95□□□□□ -0.5
LIME1-208ENST00000493265 TNFRSF18Q9Y5U5 241 aa11.95□□□□□ -0.5
LIME1-208ENST00000493265 TRBV24-1A0A075B6N3 115 aa11.94□□□□□ -0.5
LIME1-208ENST00000493265 TRBV10-1A0A0K0K1A3 114 aa11.94□□□□□ -0.5
LIME1-208ENST00000493265 OR10J3Q5JRS4 329 aa11.94□□□□□ -0.5
LIME1-208ENST00000493265 FRZBQ92765 325 aa11.94□□□□□ -0.5
LIME1-208ENST00000493265 D6R8Y8 96 aa11.93□□□□□ -0.5
LIME1-208ENST00000493265 APCSP02743 223 aa11.93□□□□□ -0.5
LIME1-208ENST00000493265 KIAA1644Q3SXP7 199 aa11.93□□□□□ -0.5
LIME1-208ENST00000493265 GNB1LQ9BYB4 327 aa11.93□□□□□ -0.5
LIME1-208ENST00000493265 NIT2Q9NQR4 276 aa11.93□□□□□ -0.5
LIME1-208ENST00000493265 TRBV7-3A0A075B6L6 115 aa11.92□□□□□ -0.5
LIME1-208ENST00000493265 IGHV3-38A0A0C4DH36 116 aa11.92□□□□□ -0.5
LIME1-208ENST00000493265 HLA-DQA1P01909 254 aa11.92□□□□□ -0.5
LIME1-208ENST00000493265 RPS10P46783 165 aaKnown RBP11.92□□□□□ -0.5
LIME1-208ENST00000493265 COX19Q49B96 90 aa11.92□□□□□ -0.5
LIME1-208ENST00000493265 NEGR1Q7Z3B1 354 aa11.92□□□□□ -0.5
LIME1-208ENST00000493265 DEFB104AQ8WTQ1 72 aa11.92□□□□□ -0.5
LIME1-208ENST00000493265 MRPL18Q9H0U6 180 aaKnown RBP11.92□□□□□ -0.5
LIME1-208ENST00000493265 FRAS1Q86XX4 4008 aa11.91□□□□□ -0.5
LIME1-208ENST00000493265 FABP9Q0Z7S8 132 aa11.91□□□□□ -0.5
LIME1-208ENST00000493265 ATP6V0E2Q8NHE4 81 aa11.91□□□□□ -0.5
LIME1-208ENST00000493265 DNAJC30Q96LL9 226 aa11.91□□□□□ -0.5
LIME1-208ENST00000493265 KRTAP17-1Q9BYP8 105 aa11.91□□□□□ -0.5
LIME1-208ENST00000493265 TRAPPC1Q9Y5R8 145 aa11.91□□□□□ -0.5
LIME1-208ENST00000493265 TCTAP57738 103 aa11.9□□□□□ -0.5
LIME1-208ENST00000493265 UBE2D3P61077 147 aa11.9□□□□□ -0.5
LIME1-208ENST00000493265 UBE2D2P62837 147 aa11.9□□□□□ -0.5
LIME1-208ENST00000493265 ORMDL3Q8N138 153 aa11.9□□□□□ -0.5
LIME1-208ENST00000493265 LINC00476Q8WZB0 136 aa11.9□□□□□ -0.5
LIME1-208ENST00000493265 PRELID3AQ96N28 172 aa11.9□□□□□ -0.5
LIME1-208ENST00000493265 LY6G6CO95867 125 aa11.89□□□□□ -0.51
LIME1-208ENST00000493265 MT-ND6P03923 174 aa11.89□□□□□ -0.51
LIME1-208ENST00000493265 LINC00694P0DN24 101 aa11.89□□□□□ -0.51
LIME1-208ENST00000493265 NRACQ8N912 160 aa11.89□□□□□ -0.51
LIME1-208ENST00000493265 ST20Q9HBF5 79 aa11.89□□□□□ -0.51
LIME1-208ENST00000493265 COLCA2A8K830 154 aa11.88□□□□□ -0.51
LIME1-208ENST00000493265 TNFRSF6BO95407 300 aa11.88□□□□□ -0.51
LIME1-208ENST00000493265 NPYP01303 97 aa11.88□□□□□ -0.51
LIME1-208ENST00000493265 PPBPP02775 128 aa11.88□□□□□ -0.51
LIME1-208ENST00000493265 ESRGQ1W209 222 aa11.88□□□□□ -0.51
LIME1-208ENST00000493265 SH2D6Q7Z4S9 175 aa11.88□□□□□ -0.51
LIME1-208ENST00000493265 UBE2DNLQ8IWF7 75 aa11.88□□□□□ -0.51
LIME1-208ENST00000493265 SDHAF1A6NFY7 115 aa11.87□□□□□ -0.51
LIME1-208ENST00000493265 LYPD5Q6UWN5 251 aa11.87□□□□□ -0.51
LIME1-208ENST00000493265 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.87□□□□□ -0.51
LIME1-208ENST00000493265 PPP1R17O96001 155 aa11.86□□□□□ -0.51
LIME1-208ENST00000493265 CCL18P55774 89 aa11.86□□□□□ -0.51
LIME1-208ENST00000493265 GTSF1LQ9H1H1 148 aa11.86□□□□□ -0.51
LIME1-208ENST00000493265 TRBV6-5A0A0K0K1A5 114 aa11.85□□□□□ -0.51
LIME1-208ENST00000493265 LOC389332A0A1B0GUA5 103 aa11.85□□□□□ -0.51
LIME1-208ENST00000493265 RAB5AP20339 215 aa11.85□□□□□ -0.51
LIME1-208ENST00000493265 PMCHP20382 165 aa11.85□□□□□ -0.51
LIME1-208ENST00000493265 SUMO2P61956 95 aaKnown RBP11.85□□□□□ -0.51
LIME1-208ENST00000493265 DAZ4Q86SG3 579 aaKnown RBP11.85□□□□□ -0.51
LIME1-208ENST00000493265 DAZ3Q9NR90 486 aaKnown RBP11.85□□□□□ -0.51
LIME1-208ENST00000493265 LINC00588Q9Y4M8 146 aa11.85□□□□□ -0.51
LIME1-208ENST00000493265 TMEM70Q9BUB7 260 aa11.83□□□□□ -0.52
LIME1-208ENST00000493265 HERC2O95714 4834 aa11.82□□□□□ -0.52
LIME1-208ENST00000493265 TRGC2P03986 189 aa11.82□□□□□ -0.52
LIME1-208ENST00000493265 COTL1Q14019 142 aa11.82□□□□□ -0.52
LIME1-208ENST00000493265 C20orf78Q9BR46 151 aa11.82□□□□□ -0.52
LIME1-208ENST00000493265 ALKBH7Q9BT30 221 aaPredicted RBP11.82□□□□□ -0.52
LIME1-208ENST00000493265 MAP1LC3AQ9H492 121 aa11.82□□□□□ -0.52
LIME1-208ENST00000493265 KMT2AQ03164 3969 aa11.82□□□□□ -0.52
LIME1-208ENST00000493265 I3L3M4 83 aa11.81□□□□□ -0.52
LIME1-208ENST00000493265 VCYO14598 125 aa11.81□□□□□ -0.52
LIME1-208ENST00000493265 PHOX2AO14813 284 aa11.81□□□□□ -0.52
LIME1-208ENST00000493265 POLR2KP53803 58 aaKnown RBP11.81□□□□□ -0.52
LIME1-208ENST00000493265 LAMTOR2Q9Y2Q5 125 aa11.81□□□□□ -0.52
LIME1-208ENST00000493265 DNAH10Q8IVF4 4471 aa11.8□□□□□ -0.52
LIME1-208ENST00000493265 LELP1Q5T871 98 aa11.8□□□□□ -0.52
LIME1-208ENST00000493265 NTM-AS1Q6ZSK4 140 aa11.8□□□□□ -0.52
LIME1-208ENST00000493265 SMIM2Q9BVW6 85 aa11.8□□□□□ -0.52
LIME1-208ENST00000493265 MRPS16Q9Y3D3 137 aaKnown RBP11.8□□□□□ -0.52
LIME1-208ENST00000493265 TRBV6-8A0A0A6YYG3 113 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms