RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	ZNF479	Q96JC4	524 aa		12.83	□□□□□ -0.36
SRM-206	ENST00000490101	PRELID3A	Q96N28	172 aa		12.83	□□□□□ -0.36
SRM-206	ENST00000490101	HIST1H2BN	Q99877	126 aa		12.83	□□□□□ -0.36
SRM-206	ENST00000490101	HIST1H2BM	Q99879	126 aa		12.83	□□□□□ -0.36
SRM-206	ENST00000490101	CELA1	Q9UNI1	258 aa		12.83	□□□□□ -0.36
SRM-206	ENST00000490101	SMKR1	H3BMG3	65 aa		12.82	□□□□□ -0.36
SRM-206	ENST00000490101	ZNF56	Q15929	161 aa		12.82	□□□□□ -0.36
SRM-206	ENST00000490101	LAMTOR2	Q9Y2Q5	125 aa		12.82	□□□□□ -0.36
SRM-206	ENST00000490101	IGHV3-73	A0A0B4J1V6	119 aa		12.81	□□□□□ -0.36
SRM-206	ENST00000490101	TRAV26-2	A0A0B4J265	109 aa		12.81	□□□□□ -0.36
SRM-206	ENST00000490101	NCR2	O95944	276 aa		12.81	□□□□□ -0.36
SRM-206	ENST00000490101	IGHV3-53	P01767	116 aa		12.81	□□□□□ -0.36
SRM-206	ENST00000490101	NANOS2	P60321	138 aa	Known RBP	12.81	□□□□□ -0.36
SRM-206	ENST00000490101	DAD1	P61803	113 aa		12.81	□□□□□ -0.36
SRM-206	ENST00000490101		M0QY20	66 aa		12.8	□□□□□ -0.36
SRM-206	ENST00000490101	GAS8-AS1	O95177	125 aa		12.8	□□□□□ -0.36
SRM-206	ENST00000490101	PPP1R17	O96001	155 aa		12.8	□□□□□ -0.36
SRM-206	ENST00000490101	GATA1	P15976	413 aa	Predicted RBP	12.8	□□□□□ -0.36
SRM-206	ENST00000490101		Q6ZSN1	163 aa		12.8	□□□□□ -0.36
SRM-206	ENST00000490101	NRAC	Q8N912	160 aa		12.8	□□□□□ -0.36
SRM-206	ENST00000490101	VPS13D	Q5THJ4	4388 aa		12.8	□□□□□ -0.36
SRM-206	ENST00000490101		H7C1H1	209 aa		12.79	□□□□□ -0.36
SRM-206	ENST00000490101	NPY	P01303	97 aa		12.79	□□□□□ -0.36
SRM-206	ENST00000490101		Q0VG73	95 aa		12.79	□□□□□ -0.36
SRM-206	ENST00000490101	C11orf45	Q8TAV5	145 aa		12.79	□□□□□ -0.36
SRM-206	ENST00000490101	TNFRSF6B	O95407	300 aa		12.78	□□□□□ -0.36
SRM-206	ENST00000490101	FHL2	Q14192	279 aa		12.78	□□□□□ -0.36
SRM-206	ENST00000490101	OR10J3	Q5JRS4	329 aa		12.78	□□□□□ -0.36
SRM-206	ENST00000490101	C18orf32	Q8TCD1	76 aa		12.78	□□□□□ -0.36
SRM-206	ENST00000490101	TMA7	Q9Y2S6	64 aa	Known RBP	12.77	□□□□□ -0.37
SRM-206	ENST00000490101	TRGV4	A0A0C4DH28	118 aa		12.76	□□□□□ -0.37
SRM-206	ENST00000490101	TRBV6-5	A0A0K0K1A5	114 aa		12.76	□□□□□ -0.37
SRM-206	ENST00000490101	PRSS47	A8MTI9	375 aa		12.76	□□□□□ -0.37
SRM-206	ENST00000490101	ATP5G1	P05496	136 aa		12.76	□□□□□ -0.37
SRM-206	ENST00000490101	C12orf74	Q32Q52	190 aa		12.76	□□□□□ -0.37
SRM-206	ENST00000490101	RPL39L	Q96EH5	51 aa	Known RBP	12.76	□□□□□ -0.37
SRM-206	ENST00000490101	C20orf78	Q9BR46	151 aa		12.76	□□□□□ -0.37
SRM-206	ENST00000490101	NIT2	Q9NQR4	276 aa		12.76	□□□□□ -0.37
SRM-206	ENST00000490101	TRBV6-4	A0A1B0GX49	114 aa		12.75	□□□□□ -0.37
SRM-206	ENST00000490101	COA6	Q5JTJ3	125 aa	Known RBP	12.75	□□□□□ -0.37
SRM-206	ENST00000490101	LGALS9C	Q6DKI2	356 aa		12.75	□□□□□ -0.37
SRM-206	ENST00000490101	TRBV10-1	A0A0K0K1A3	114 aa		12.74	□□□□□ -0.37
SRM-206	ENST00000490101	IQCJ	Q1A5X6	159 aa		12.74	□□□□□ -0.37
SRM-206	ENST00000490101	SLC25A29	Q8N8R3	303 aa		12.74	□□□□□ -0.37
SRM-206	ENST00000490101	DNAJC30	Q96LL9	226 aa		12.74	□□□□□ -0.37
SRM-206	ENST00000490101	MAP1LC3A	Q9H492	121 aa		12.74	□□□□□ -0.37
SRM-206	ENST00000490101	HECTD4	Q9Y4D8	3996 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101		K7EQD1	137 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101		P0DMU3	169 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101	FAM231A	P0DMU4	169 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101	FAM231C	P0DMU5	169 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101	HOXA5	P20719	270 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101	NDUFA6	P56556	154 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101	SUMO2	P61956	95 aa	Known RBP	12.73	□□□□□ -0.37
SRM-206	ENST00000490101	RPL32	P62910	135 aa	Known RBP	12.73	□□□□□ -0.37
SRM-206	ENST00000490101	BAGE3	Q86Y29	109 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101	ST20	Q9HBF5	79 aa		12.73	□□□□□ -0.37
SRM-206	ENST00000490101	NEXN-AS1	Q8NBZ9	246 aa		12.72	□□□□□ -0.37
SRM-206	ENST00000490101	PRO0255	Q9UI72	69 aa		12.72	□□□□□ -0.37
SRM-206	ENST00000490101	HHLA3	Q9XRX5	114 aa		12.72	□□□□□ -0.37
SRM-206	ENST00000490101	DNAH6	Q9C0G6	4158 aa		12.72	□□□□□ -0.37
SRM-206	ENST00000490101	LOC389332	A0A1B0GUA5	103 aa		12.71	□□□□□ -0.37
SRM-206	ENST00000490101	POLR2K	P53803	58 aa	Known RBP	12.71	□□□□□ -0.37
SRM-206	ENST00000490101	RHOH	Q15669	191 aa		12.71	□□□□□ -0.37
SRM-206	ENST00000490101	NIT1	Q86X76	327 aa		12.71	□□□□□ -0.37
SRM-206	ENST00000490101	SMIM2	Q9BVW6	85 aa		12.71	□□□□□ -0.37
SRM-206	ENST00000490101	NXT2	Q9NPJ8	142 aa	Known RBP	12.71	□□□□□ -0.37
SRM-206	ENST00000490101		Q9UF83	564 aa		12.71	□□□□□ -0.37
SRM-206	ENST00000490101	IGLV2-18	A0A075B6J9	118 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	S100A6	P06703	90 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	CRYBA4	P53673	196 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101		Q8N8P6	123 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	PRSS3P2	Q8NHM4	247 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	URB1-AS1	Q96HZ7	61 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	PRADC1	Q9BSG0	188 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	TMEM70	Q9BUB7	260 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	TNFRSF18	Q9Y5U5	241 aa		12.7	□□□□□ -0.38
SRM-206	ENST00000490101	SDHAF1	A6NFY7	115 aa		12.69	□□□□□ -0.38
SRM-206	ENST00000490101	IGLL5	B9A064	214 aa		12.69	□□□□□ -0.38
SRM-206	ENST00000490101	SERF1A	O75920	110 aa		12.69	□□□□□ -0.38
SRM-206	ENST00000490101	PMCH	P20382	165 aa		12.69	□□□□□ -0.38
SRM-206	ENST00000490101	IFI27	P40305	119 aa	Predicted RBP	12.69	□□□□□ -0.38
SRM-206	ENST00000490101	LINC00310	P59036	64 aa		12.69	□□□□□ -0.38
SRM-206	ENST00000490101		Q6ZTC4	211 aa		12.69	□□□□□ -0.38
SRM-206	ENST00000490101	HERC2	O95714	4834 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101	TRBV27	A0A0K0K1C4	114 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101	LINC01546	A6NGU7	62 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101		F5H768	121 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101	VCY	O14598	125 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101	LINC00614	P0C842	121 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101	ESD	P10768	282 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101	RPL36A	P83881	106 aa	Known RBP	12.68	□□□□□ -0.38
SRM-206	ENST00000490101	FA2H	Q7L5A8	372 aa		12.68	□□□□□ -0.38
SRM-206	ENST00000490101	RPL36AL	Q969Q0	106 aa	Known RBP	12.68	□□□□□ -0.38
SRM-206	ENST00000490101	CHCHD1	Q96BP2	118 aa	Known RBP	12.68	□□□□□ -0.38
SRM-206	ENST00000490101	TRBV7-3	A0A075B6L6	115 aa		12.67	□□□□□ -0.38
SRM-206	ENST00000490101	C5orf52	A6NGY3	159 aa		12.67	□□□□□ -0.38
SRM-206	ENST00000490101	PAX4	O43316	350 aa		12.67	□□□□□ -0.38
SRM-206	ENST00000490101	HTN3	P15516	51 aa		12.67	□□□□□ -0.38
SRM-206	ENST00000490101	NUPR1	O60356	82 aa		12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms