RNA–Protein interactions for RNA: ENST00000489611.5

COL9A1-208, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 2

Gene COL9A1, Length 1,940 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-208ENST00000489611 Q6ZVH6 145 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 DLX4Q92988 240 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-208ENST00000489611 RAX2Q96IS3 184 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 TM2D2Q9BX73 214 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 CUBNO60494 3623 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 TCTAP57738 103 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 ZNF415Q09FC8 603 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 C18orf65Q6ZTR6 163 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 GTF2H5Q6ZYL4 71 aa11.01□□□□□ -0.65
COL9A1-208ENST00000489611 KNCNA6PVL3 124 aa11□□□□□ -0.65
COL9A1-208ENST00000489611 HERVK_113P61574 105 aa11□□□□□ -0.65
COL9A1-208ENST00000489611 MAP6D1Q9H9H5 199 aa11□□□□□ -0.65
COL9A1-208ENST00000489611 TRAV8-6A0A0B4J262 113 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 I3L3M4 83 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 M0R2P5 195 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 SMIM13P0DJ93 91 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 FHL3Q13643 280 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 MYMXA0A1B0GTQ4 84 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 K7EP13 123 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 CMC4P56277 68 aaPredicted RBP10.99□□□□□ -0.65
COL9A1-208ENST00000489611 AMMECR1LQ6DCA0 310 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 SPXQ9BT56 116 aa10.99□□□□□ -0.65
COL9A1-208ENST00000489611 CEND1Q8N111 149 aa10.98□□□□□ -0.65
COL9A1-208ENST00000489611 DUX3Q96PT4 197 aa10.98□□□□□ -0.65
COL9A1-208ENST00000489611 RHODO00212 210 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 INSP01308 110 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 GCSHP23434 173 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 CST9LQ9H4G1 147 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 C16orf95Q9H693 158 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 INAFM1C9JVW0 142 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 NEGR1Q7Z3B1 354 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 AGRNO00468 2067 aa10.97□□□□□ -0.65
COL9A1-208ENST00000489611 RBMY1A1P0DJD3 496 aaKnown RBP10.96□□□□□ -0.65
COL9A1-208ENST00000489611 RBMY1CP0DJD4 496 aa10.96□□□□□ -0.65
COL9A1-208ENST00000489611 CRYBA4P53673 196 aa10.96□□□□□ -0.65
COL9A1-208ENST00000489611 RBMY1FQ15415 496 aaKnown RBP10.96□□□□□ -0.65
COL9A1-208ENST00000489611 CD300EQ496F6 205 aaPredicted RBP10.96□□□□□ -0.65
COL9A1-208ENST00000489611 MORN3Q6PF18 240 aaPredicted RBP10.96□□□□□ -0.65
COL9A1-208ENST00000489611 TSSC4Q9Y5U2 329 aaPredicted RBP10.96□□□□□ -0.65
COL9A1-208ENST00000489611 GAGE10A6NGK3 116 aa10.96□□□□□ -0.66
COL9A1-208ENST00000489611 C11orf86A6NJI1 115 aa10.96□□□□□ -0.66
COL9A1-208ENST00000489611 TSHBP01222 138 aa10.96□□□□□ -0.66
COL9A1-208ENST00000489611 RNASE1P07998 156 aaKnown RBP10.96□□□□□ -0.66
COL9A1-208ENST00000489611 C20orf203Q8NBC4 194 aa10.96□□□□□ -0.66
COL9A1-208ENST00000489611 CYSRT1A8MQ03 144 aa10.95□□□□□ -0.66
COL9A1-208ENST00000489611 CCL24O00175 119 aa10.95□□□□□ -0.66
COL9A1-208ENST00000489611 MAPKAPK5-AS1Q8N8E1 139 aa10.95□□□□□ -0.66
COL9A1-208ENST00000489611 TTTY13Q9BZ97 58 aa10.95□□□□□ -0.66
COL9A1-208ENST00000489611 HIVEP2P31629 2446 aa10.95□□□□□ -0.66
COL9A1-208ENST00000489611 SETXQ7Z333 2677 aaKnown RBP10.94□□□□□ -0.66
COL9A1-208ENST00000489611 IGLV4-69A0A075B6H9 119 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 RBMY1BA6NDE4 496 aaKnown RBP10.94□□□□□ -0.66
COL9A1-208ENST00000489611 RBMY1EA6NEQ0 496 aaKnown RBP10.94□□□□□ -0.66
COL9A1-208ENST00000489611 RBMY1DP0C7P1 496 aaKnown RBP10.94□□□□□ -0.66
COL9A1-208ENST00000489611 DNAJC30Q96LL9 226 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 HIST1H4GQ99525 98 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 PRADC1Q9BSG0 188 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 PYGO1Q9Y3Y4 419 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 RPL39P62891 51 aaKnown RBP10.94□□□□□ -0.66
COL9A1-208ENST00000489611 UFSP1Q6NVU6 142 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 NFE4Q86UQ8 179 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 OR5A1Q8NGJ0 315 aa10.94□□□□□ -0.66
COL9A1-208ENST00000489611 ZNF418Q8TF45 676 aaPredicted RBP10.94□□□□□ -0.66
COL9A1-208ENST00000489611 A0A1W2PPM0 123 aa10.93□□□□□ -0.66
COL9A1-208ENST00000489611 H3BUT2 72 aa10.93□□□□□ -0.66
COL9A1-208ENST00000489611 FXYD2P54710 66 aa10.93□□□□□ -0.66
COL9A1-208ENST00000489611 BEAN1Q3B7T3 259 aa10.93□□□□□ -0.66
COL9A1-208ENST00000489611 LINC01587Q99440 93 aa10.93□□□□□ -0.66
COL9A1-208ENST00000489611 TNFRSF18Q9Y5U5 241 aa10.93□□□□□ -0.66
COL9A1-208ENST00000489611 K7EP34 96 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 FABP2P12104 132 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 HILS1P60008 231 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 STHQ8IWL8 128 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 FAM110AQ9BQ89 295 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 MTORP42345 2549 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 TMEM238LA0A1B0GVL6 79 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 A6NJY4 79 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 HTN1P15515 57 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 C11orf72Q8NBR9 251 aa10.92□□□□□ -0.66
COL9A1-208ENST00000489611 ZNF815PA8K554 130 aa10.91□□□□□ -0.66
COL9A1-208ENST00000489611 SAMD5Q5TGI4 173 aa10.91□□□□□ -0.66
COL9A1-208ENST00000489611 TRBV7-3A0A075B6L6 115 aa10.9□□□□□ -0.66
COL9A1-208ENST00000489611 P0DMU3 169 aa10.9□□□□□ -0.66
COL9A1-208ENST00000489611 FAM231AP0DMU4 169 aa10.9□□□□□ -0.66
COL9A1-208ENST00000489611 FAM231CP0DMU5 169 aa10.9□□□□□ -0.66
COL9A1-208ENST00000489611 ODF3L2Q3SX64 289 aa10.9□□□□□ -0.66
COL9A1-208ENST00000489611 HIST2H2BDQ6DRA6 164 aa10.9□□□□□ -0.66
COL9A1-208ENST00000489611 SORL1Q92673 2214 aa10.9□□□□□ -0.66
COL9A1-208ENST00000489611 GAGE12BA1L429 117 aa10.9□□□□□ -0.67
COL9A1-208ENST00000489611 IGHV3-53P01767 116 aa10.9□□□□□ -0.67
COL9A1-208ENST00000489611 CFAP126Q5VTH2 177 aa10.9□□□□□ -0.67
COL9A1-208ENST00000489611 SCGB1D4Q6XE38 83 aa10.9□□□□□ -0.67
COL9A1-208ENST00000489611 LINC01006Q8NI28 216 aa10.9□□□□□ -0.67
COL9A1-208ENST00000489611 RAB37Q96AX2 223 aa10.9□□□□□ -0.67
COL9A1-208ENST00000489611 VCX2Q9H322 139 aa10.9□□□□□ -0.67
COL9A1-208ENST00000489611 NHP2Q9NX24 153 aaKnown RBP10.9□□□□□ -0.67
COL9A1-208ENST00000489611 HIVEP1P15822 2718 aa10.89□□□□□ -0.67
COL9A1-208ENST00000489611 A0A1B0GWB2 263 aa10.89□□□□□ -0.67
COL9A1-208ENST00000489611 CD28P10747 220 aa10.89□□□□□ -0.67
COL9A1-208ENST00000489611 PHLDA1Q8WV24 401 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms