RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 K7EP13 123 aa12.66□□□□□ -0.38
PTCD3-217ENST00000488801 MGPP08493 103 aa12.66□□□□□ -0.38
PTCD3-217ENST00000488801 PNRC1Q12796 327 aaPredicted RBP12.66□□□□□ -0.38
PTCD3-217ENST00000488801 LINC01556Q5JQF7 62 aa12.66□□□□□ -0.38
PTCD3-217ENST00000488801 C1orf134Q5TEV5 83 aa12.66□□□□□ -0.38
PTCD3-217ENST00000488801 LINC00336Q6ZUF6 198 aa12.66□□□□□ -0.38
PTCD3-217ENST00000488801 NUP35Q8NFH5 326 aa12.66□□□□□ -0.38
PTCD3-217ENST00000488801 C6orf223Q8N319 242 aa12.65□□□□□ -0.38
PTCD3-217ENST00000488801 NAT8BQ9UHF3 227 aa12.65□□□□□ -0.38
PTCD3-217ENST00000488801 A0A087WWC5 75 aa12.64□□□□□ -0.39
PTCD3-217ENST00000488801 IGHV3-38A0A0C4DH36 116 aa12.64□□□□□ -0.39
PTCD3-217ENST00000488801 LINC00862A6NCI5 91 aa12.64□□□□□ -0.39
PTCD3-217ENST00000488801 H7C1H1 209 aa12.64□□□□□ -0.39
PTCD3-217ENST00000488801 DNAJC30Q96LL9 226 aa12.64□□□□□ -0.39
PTCD3-217ENST00000488801 TRAV8-6A0A0B4J262 113 aa12.63□□□□□ -0.39
PTCD3-217ENST00000488801 OR10J3Q5JRS4 329 aa12.63□□□□□ -0.39
PTCD3-217ENST00000488801 RASL11AQ6T310 242 aa12.63□□□□□ -0.39
PTCD3-217ENST00000488801 Q6ZRN7 208 aaPredicted RBP12.63□□□□□ -0.39
PTCD3-217ENST00000488801 A0A1B0GVY2 172 aa12.62□□□□□ -0.39
PTCD3-217ENST00000488801 TMEM218A2RU14 115 aa12.62□□□□□ -0.39
PTCD3-217ENST00000488801 COMMD7Q86VX2 200 aa12.62□□□□□ -0.39
PTCD3-217ENST00000488801 GATD1Q8NB37 220 aa12.62□□□□□ -0.39
PTCD3-217ENST00000488801 BORCS7Q96B45 105 aa12.62□□□□□ -0.39
PTCD3-217ENST00000488801 TMEM191AQ9H0A3 160 aa12.62□□□□□ -0.39
PTCD3-217ENST00000488801 PKHD1P08F94 4074 aa12.62□□□□□ -0.39
PTCD3-217ENST00000488801 FRZBQ92765 325 aa12.61□□□□□ -0.39
PTCD3-217ENST00000488801 DNAH11Q96DT5 4516 aa12.61□□□□□ -0.39
PTCD3-217ENST00000488801 DAZ4Q86SG3 579 aaKnown RBP12.6□□□□□ -0.39
PTCD3-217ENST00000488801 C10orf126Q8N4M7 172 aa12.6□□□□□ -0.39
PTCD3-217ENST00000488801 RNF185Q96GF1 192 aa12.6□□□□□ -0.39
PTCD3-217ENST00000488801 NIT2Q9NQR4 276 aa12.6□□□□□ -0.39
PTCD3-217ENST00000488801 DAZ3Q9NR90 486 aaKnown RBP12.6□□□□□ -0.39
PTCD3-217ENST00000488801 TRBV6-8A0A0A6YYG3 113 aa12.59□□□□□ -0.39
PTCD3-217ENST00000488801 TRAV26-2A0A0B4J265 109 aa12.59□□□□□ -0.39
PTCD3-217ENST00000488801 PPP1R2P9O14990 202 aa12.59□□□□□ -0.39
PTCD3-217ENST00000488801 RIGQ13278 110 aa12.59□□□□□ -0.39
PTCD3-217ENST00000488801 SMIM15Q7Z3B0 74 aa12.59□□□□□ -0.39
PTCD3-217ENST00000488801 Q8N3U1 123 aa12.59□□□□□ -0.39
PTCD3-217ENST00000488801 BIRC6Q9NR09 4857 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 A0A1B0GXF2 115 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 PRSS29PA6NIE9 313 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 C10orf91Q5T1B1 145 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 NTM-AS1Q6ZSK4 140 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 NIT1Q86X76 327 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 ANAPC16Q96DE5 110 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 SEC11CQ9BY50 192 aa12.58□□□□□ -0.4
PTCD3-217ENST00000488801 TRAV9-2A0A087WT02 112 aa12.57□□□□□ -0.4
PTCD3-217ENST00000488801 TMEM97Q5BJF2 176 aa12.57□□□□□ -0.4
PTCD3-217ENST00000488801 TNFRSF18Q9Y5U5 241 aa12.57□□□□□ -0.4
PTCD3-217ENST00000488801 A0A1B0GW15 77 aa12.56□□□□□ -0.4
PTCD3-217ENST00000488801 IBA57-AS1B1ANH7 110 aa12.56□□□□□ -0.4
PTCD3-217ENST00000488801 RAB4AP20338 218 aa12.56□□□□□ -0.4
PTCD3-217ENST00000488801 LAGE3Q14657 143 aa12.56□□□□□ -0.4
PTCD3-217ENST00000488801 RPL39LQ96EH5 51 aaKnown RBP12.56□□□□□ -0.4
PTCD3-217ENST00000488801 CHCHD7Q9BUK0 85 aa12.56□□□□□ -0.4
PTCD3-217ENST00000488801 TRBV6-5A0A0K0K1A5 114 aa12.55□□□□□ -0.4
PTCD3-217ENST00000488801 F8W036 122 aa12.55□□□□□ -0.4
PTCD3-217ENST00000488801 GAS8-AS1O95177 125 aa12.55□□□□□ -0.4
PTCD3-217ENST00000488801 MT-ND4LP03901 98 aa12.55□□□□□ -0.4
PTCD3-217ENST00000488801 TNP2Q05952 138 aa12.55□□□□□ -0.4
PTCD3-217ENST00000488801 IQCJQ1A5X6 159 aa12.55□□□□□ -0.4
PTCD3-217ENST00000488801 AMN1Q8IY45 258 aa12.55□□□□□ -0.4
PTCD3-217ENST00000488801 IGHV3-30P01768 117 aa12.54□□□□□ -0.4
PTCD3-217ENST00000488801 IGHV3-33P01772 117 aa12.54□□□□□ -0.4
PTCD3-217ENST00000488801 IGHV3-30-3P0DP02 117 aa12.54□□□□□ -0.4
PTCD3-217ENST00000488801 IGHV3-30-5P0DP03 117 aa12.54□□□□□ -0.4
PTCD3-217ENST00000488801 ATP5L2Q7Z4Y8 100 aa12.54□□□□□ -0.4
PTCD3-217ENST00000488801 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.54□□□□□ -0.4
PTCD3-217ENST00000488801 MRAP2Q96G30 205 aa12.54□□□□□ -0.4
PTCD3-217ENST00000488801 CARHSP1Q9Y2V2 147 aaKnown RBP12.54□□□□□ -0.4
PTCD3-217ENST00000488801 FAM104BQ5XKR9 115 aa12.53□□□□□ -0.4
PTCD3-217ENST00000488801 RPS10P46783 165 aaKnown RBP12.52□□□□□ -0.41
PTCD3-217ENST00000488801 HBBP68871 147 aa12.52□□□□□ -0.41
PTCD3-217ENST00000488801 MRPL54Q6P161 138 aaKnown RBP12.52□□□□□ -0.41
PTCD3-217ENST00000488801 NFE4Q86UQ8 179 aa12.52□□□□□ -0.41
PTCD3-217ENST00000488801 DYNC1H1Q14204 4646 aaKnown RBP12.51□□□□□ -0.41
PTCD3-217ENST00000488801 TRBV25-1A0A075B6N4 114 aa12.51□□□□□ -0.41
PTCD3-217ENST00000488801 SDHAF1A6NFY7 115 aa12.5□□□□□ -0.41
PTCD3-217ENST00000488801 CAMPP49913 170 aa12.5□□□□□ -0.41
PTCD3-217ENST00000488801 MRPL51Q4U2R6 128 aaKnown RBP12.5□□□□□ -0.41
PTCD3-217ENST00000488801 NRACQ8N912 160 aa12.5□□□□□ -0.41
PTCD3-217ENST00000488801 IGHV1-24A0A0C4DH33 117 aa12.49□□□□□ -0.41
PTCD3-217ENST00000488801 S100A8P05109 93 aa12.49□□□□□ -0.41
PTCD3-217ENST00000488801 MPV17L2Q567V2 206 aa12.49□□□□□ -0.41
PTCD3-217ENST00000488801 KCNIP4Q6PIL6 250 aa12.49□□□□□ -0.41
PTCD3-217ENST00000488801 IMMP2LQ96T52 175 aa12.49□□□□□ -0.41
PTCD3-217ENST00000488801 POLR2KP53803 58 aaKnown RBP12.48□□□□□ -0.41
PTCD3-217ENST00000488801 PKIAP61925 76 aa12.48□□□□□ -0.41
PTCD3-217ENST00000488801 TMEM70Q9BUB7 260 aa12.48□□□□□ -0.41
PTCD3-217ENST00000488801 CTDSP1Q9GZU7 261 aa12.48□□□□□ -0.41
PTCD3-217ENST00000488801 DNAH5Q8TE73 4624 aa12.48□□□□□ -0.41
PTCD3-217ENST00000488801 NCR2O95944 276 aa12.47□□□□□ -0.41
PTCD3-217ENST00000488801 COTL1Q14019 142 aa12.47□□□□□ -0.41
PTCD3-217ENST00000488801 CHCHD5Q9BSY4 110 aa12.47□□□□□ -0.41
PTCD3-217ENST00000488801 URGCP-MRPS24S4R325 110 aa12.47□□□□□ -0.41
PTCD3-217ENST00000488801 A0A087WX48 190 aa12.46□□□□□ -0.41
PTCD3-217ENST00000488801 TRBV27A0A0K0K1C4 114 aa12.46□□□□□ -0.41
PTCD3-217ENST00000488801 SMKR1H3BMG3 65 aa12.46□□□□□ -0.41
PTCD3-217ENST00000488801 ATRAIDQ6UW56 229 aa12.46□□□□□ -0.41
PTCD3-217ENST00000488801 TMEM243Q9BU79 118 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms