RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 OR8I2Q8N0Y5 310 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 FAM24BQ8N5W8 94 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 Q8N9L7 120 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 OR11H1Q8NG94 326 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 OR10D4PQ8NGN7 298 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 FXYD5Q96DB9 178 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 METTL26Q96S19 204 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 GNG13Q9P2W3 67 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 UFC1Q9Y3C8 167 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 ARL2-SNX15V9GYD0 113 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 ZFHX3Q15911 3703 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 TRBV19A0A075B6N1 114 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 IGHV3OR16-8A0A075B7F1 116 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 TRAV8-6A0A0B4J262 113 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 IGHV7-4-1A0A0J9YVY3 117 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 A0A1W2PRE2 83 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 C9JQL5 133 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 TMEM250H0YL14 139 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 H3BQ15 152 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 BPY2O14599 106 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 PDE6DO43924 150 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 OR10J4P0C629 311 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 IGLC2P0DOY2 106 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 UBE2G2P60604 165 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 RANP62826 216 aaKnown RBP2.53□□□□□ -2
PTCD3-216ENST00000487043 UBE2L3P68036 154 aaKnown RBP2.53□□□□□ -2
PTCD3-216ENST00000487043 PDE6HQ13956 83 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 PSG3Q16557 428 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 PYY3Q5JQD4 70 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 ACTL10Q5JWF8 245 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 SAPCD1Q5SSQ6 148 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 LYPD1Q8N2G4 141 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 TMEM256Q8N2U0 113 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 C4orf3Q8WVX3 66 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 TVP23CQ96ET8 276 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 C18orf15Q96N68 181 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 GPR82Q96P67 336 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 RHPN1-AS1Q9BWJ2 59 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 DAZ1Q9NQZ3 744 aaKnown RBP2.53□□□□□ -2
PTCD3-216ENST00000487043 ZNF586Q9NXT0 402 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 SMPXQ9UHP9 88 aa2.53□□□□□ -2
PTCD3-216ENST00000487043 MAST4O15021 2626 aa2.53□□□□□ -2.01
PTCD3-216ENST00000487043 SETD2Q9BYW2 2564 aaPredicted RBP2.52□□□□□ -2.01
PTCD3-216ENST00000487043 IGHV3-49A0A0A0MS15 119 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 TMEM213A2RRL7 107 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 PGPA6NDG6 321 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 C2orf70A6NJV1 201 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 GGTLC3B5MD39 225 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 F6UZH7 168 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 PSPHP1O15172 72 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 DLEU1O43261 78 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 SNAI2O43623 268 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 ZNF207O43670 478 aaKnown RBP2.52□□□□□ -2.01
PTCD3-216ENST00000487043 HLA-DQA1P01909 254 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 ZNF25P17030 456 aaPredicted RBP2.52□□□□□ -2.01
PTCD3-216ENST00000487043 CBLN1P23435 193 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 ATP5G3P48201 142 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 PSG9Q00887 426 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 ELOBQ15370 118 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 IQCJQ1A5X6 159 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 TMEM241Q24JQ0 296 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 DEFB136Q30KP8 78 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 NDUFA11Q86Y39 141 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 HIST3H2BBQ8N257 126 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 OR2D3Q8NGH3 330 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 BLNKQ8WV28 456 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 PACRGQ96M98 296 aaPredicted RBP2.52□□□□□ -2.01
PTCD3-216ENST00000487043 OTORQ9NRC9 128 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 C8orf17Q9NRJ1 99 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 EPDR1Q9UM22 224 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 YTHDF2Q9Y5A9 579 aaKnown RBP2.52□□□□□ -2.01
PTCD3-216ENST00000487043 C2CD3Q4AC94 2353 aa2.52□□□□□ -2.01
PTCD3-216ENST00000487043 TEP1Q99973 2627 aaKnown RBP2.52□□□□□ -2.01
PTCD3-216ENST00000487043 NACAE9PAV3 2078 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 TRBV24-1A0A075B6N3 115 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 ZNF727A8MUV8 499 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 SLC17A3O00476 420 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST1H2BKO60814 126 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 TCRAP04437 139 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST1H2BJP06899 126 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 TRGC1P0CF51 173 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 FABP4P15090 132 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST1H2BOP23527 126 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST1H2BBP33778 126 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 CEBPGP53567 150 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST1H2BDP58876 126 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST1H2BCP62807 126 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 RPL19P84098 196 aaKnown RBP2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST2H2BEQ16778 126 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 RNASE13Q5GAN3 156 aaKnown RBP2.51□□□□□ -2.01
PTCD3-216ENST00000487043 TTC32Q5I0X7 151 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.51□□□□□ -2.01
PTCD3-216ENST00000487043 LCE3AQ5TA76 89 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 TCF24Q7RTU0 167 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 SMIM15Q7Z3B0 74 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 EXOC3-AS1Q8N2X6 119 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 C5orf17Q8NAS9 161 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 CMTM2Q8TAZ6 248 aa2.51□□□□□ -2.01
PTCD3-216ENST00000487043 HIST1H2BHQ93079 126 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms