RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 KIF25-AS1Q9Y6Z4 181 aa11.48□□□□□ -0.57
TRIM54-203ENST00000485306 DNAH2Q9P225 4427 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 A0A087WWL8 130 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 TRGV4A0A0C4DH28 118 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 CAMPP49913 170 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 FHL2Q14192 279 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 ELOBQ15370 118 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 FAM74A4Q5TZK3 123 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 SAMD10Q9BYL1 202 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 HHLA3Q9XRX5 114 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 MRPS16Q9Y3D3 137 aaKnown RBP11.47□□□□□ -0.57
TRIM54-203ENST00000485306 ICOSQ9Y6W8 199 aa11.47□□□□□ -0.57
TRIM54-203ENST00000485306 A0A096LPF7 62 aa11.46□□□□□ -0.57
TRIM54-203ENST00000485306 TRBV6-4A0A1B0GX49 114 aa11.46□□□□□ -0.57
TRIM54-203ENST00000485306 GATA1P15976 413 aaPredicted RBP11.46□□□□□ -0.57
TRIM54-203ENST00000485306 LINC00315P59091 139 aa11.46□□□□□ -0.57
TRIM54-203ENST00000485306 RAB4BP61018 213 aa11.46□□□□□ -0.57
TRIM54-203ENST00000485306 DNAH17Q9UFH2 4485 aa11.45□□□□□ -0.58
TRIM54-203ENST00000485306 CRYBA4P53673 196 aa11.44□□□□□ -0.58
TRIM54-203ENST00000485306 ZNF56Q15929 161 aa11.44□□□□□ -0.58
TRIM54-203ENST00000485306 MRPL23Q16540 153 aaKnown RBP11.44□□□□□ -0.58
TRIM54-203ENST00000485306 FAM104BQ5XKR9 115 aa11.44□□□□□ -0.58
TRIM54-203ENST00000485306 CBLN2Q8IUK8 224 aa11.44□□□□□ -0.58
TRIM54-203ENST00000485306 YPEL4Q96NS1 127 aa11.44□□□□□ -0.58
TRIM54-203ENST00000485306 FAT2Q9NYQ8 4349 aa11.44□□□□□ -0.58
TRIM54-203ENST00000485306 IGHV3-73A0A0B4J1V6 119 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 F5H697 171 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 H7C1H1 209 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 MT-ND6P03923 174 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 MGPP08493 103 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 RHOHQ15669 191 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 PRADC1Q9BSG0 188 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 GNB1LQ9BYB4 327 aa11.43□□□□□ -0.58
TRIM54-203ENST00000485306 TGIF2-C20orf24A0A0A6YYL0 155 aa11.42□□□□□ -0.58
TRIM54-203ENST00000485306 TRBV10-1A0A0K0K1A3 114 aa11.42□□□□□ -0.58
TRIM54-203ENST00000485306 HLA-DQA1P01909 254 aa11.42□□□□□ -0.58
TRIM54-203ENST00000485306 BTF3P20290 206 aaKnown RBP11.42□□□□□ -0.58
TRIM54-203ENST00000485306 RAB4AP20338 218 aa11.42□□□□□ -0.58
TRIM54-203ENST00000485306 MRAP2Q96G30 205 aa11.42□□□□□ -0.58
TRIM54-203ENST00000485306 K7EQD1 137 aa11.41□□□□□ -0.58
TRIM54-203ENST00000485306 TNP2Q05952 138 aa11.41□□□□□ -0.58
TRIM54-203ENST00000485306 TMEM136Q6ZRR5 245 aa11.41□□□□□ -0.58
TRIM54-203ENST00000485306 NEGR1Q7Z3B1 354 aa11.41□□□□□ -0.58
TRIM54-203ENST00000485306 AMN1Q8IY45 258 aa11.41□□□□□ -0.58
TRIM54-203ENST00000485306 RNF185Q96GF1 192 aa11.41□□□□□ -0.58
TRIM54-203ENST00000485306 SIVA1O15304 175 aa11.4□□□□□ -0.58
TRIM54-203ENST00000485306 PPP1R17O96001 155 aa11.4□□□□□ -0.58
TRIM54-203ENST00000485306 C4orf48Q5BLP8 95 aa11.4□□□□□ -0.58
TRIM54-203ENST00000485306 SUMO4Q6EEV6 95 aa11.4□□□□□ -0.58
TRIM54-203ENST00000485306 SLC25A29Q8N8R3 303 aa11.4□□□□□ -0.58
TRIM54-203ENST00000485306 M0QY20 66 aa11.39□□□□□ -0.59
TRIM54-203ENST00000485306 PPBPP02775 128 aa11.39□□□□□ -0.59
TRIM54-203ENST00000485306 SRIP30626 198 aa11.39□□□□□ -0.59
TRIM54-203ENST00000485306 LYPD5Q6UWN5 251 aa11.39□□□□□ -0.59
TRIM54-203ENST00000485306 Q6ZSN1 163 aa11.39□□□□□ -0.59
TRIM54-203ENST00000485306 DNAJC30Q96LL9 226 aa11.39□□□□□ -0.59
TRIM54-203ENST00000485306 SCO1O75880 301 aa11.38□□□□□ -0.59
TRIM54-203ENST00000485306 MRPL51Q4U2R6 128 aaKnown RBP11.38□□□□□ -0.59
TRIM54-203ENST00000485306 PKD1P98161 4303 aa11.38□□□□□ -0.59
TRIM54-203ENST00000485306 GYPEP15421 78 aa11.37□□□□□ -0.59
TRIM54-203ENST00000485306 RPL36AP83881 106 aaKnown RBP11.37□□□□□ -0.59
TRIM54-203ENST00000485306 SH2D6Q7Z4S9 175 aa11.37□□□□□ -0.59
TRIM54-203ENST00000485306 RPL36ALQ969Q0 106 aaKnown RBP11.37□□□□□ -0.59
TRIM54-203ENST00000485306 KRTAP1-5Q9BYS1 174 aa11.37□□□□□ -0.59
TRIM54-203ENST00000485306 TRAV9-2A0A087WT02 112 aa11.36□□□□□ -0.59
TRIM54-203ENST00000485306 COLCA2A8K830 154 aa11.36□□□□□ -0.59
TRIM54-203ENST00000485306 APCSP02743 223 aa11.36□□□□□ -0.59
TRIM54-203ENST00000485306 CKS2P33552 79 aa11.36□□□□□ -0.59
TRIM54-203ENST00000485306 NIT2Q9NQR4 276 aa11.36□□□□□ -0.59
TRIM54-203ENST00000485306 TRAPPC1Q9Y5R8 145 aa11.36□□□□□ -0.59
TRIM54-203ENST00000485306 PHOX2AO14813 284 aa11.35□□□□□ -0.59
TRIM54-203ENST00000485306 ORMDL3Q8N138 153 aa11.35□□□□□ -0.59
TRIM54-203ENST00000485306 LAMTOR2Q9Y2Q5 125 aa11.35□□□□□ -0.59
TRIM54-203ENST00000485306 PKHD1P08F94 4074 aa11.34□□□□□ -0.59
TRIM54-203ENST00000485306 TRBV7-3A0A075B6L6 115 aa11.34□□□□□ -0.59
TRIM54-203ENST00000485306 TRAV26-2A0A0B4J265 109 aa11.34□□□□□ -0.59
TRIM54-203ENST00000485306 TRBV6-5A0A0K0K1A5 114 aa11.34□□□□□ -0.59
TRIM54-203ENST00000485306 C16orf90A8MZG2 172 aa11.34□□□□□ -0.59
TRIM54-203ENST00000485306 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.34□□□□□ -0.59
TRIM54-203ENST00000485306 NEXN-AS1Q8NBZ9 246 aa11.34□□□□□ -0.59
TRIM54-203ENST00000485306 MRPL18Q9H0U6 180 aaKnown RBP11.34□□□□□ -0.59
TRIM54-203ENST00000485306 TNFRSF18Q9Y5U5 241 aa11.34□□□□□ -0.59
TRIM54-203ENST00000485306 LOC100131303A0A0U1RQF7 123 aa11.33□□□□□ -0.6
TRIM54-203ENST00000485306 D6R8Y8 96 aa11.33□□□□□ -0.6
TRIM54-203ENST00000485306 LINC00694P0DN24 101 aa11.33□□□□□ -0.6
TRIM54-203ENST00000485306 RAB5AP20339 215 aa11.33□□□□□ -0.6
TRIM54-203ENST00000485306 FABP9Q0Z7S8 132 aa11.33□□□□□ -0.6
TRIM54-203ENST00000485306 OR10J3Q5JRS4 329 aa11.33□□□□□ -0.6
TRIM54-203ENST00000485306 HERC2O95714 4834 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 GAGE12JA6NER3 117 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 K7EP13 123 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 GAGE1Q13065 139 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 GAGE4Q13068 117 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 GAGE5Q13069 117 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 GAGE13Q4V321 117 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 PRELID3AQ96N28 172 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 C20orf78Q9BR46 151 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 KIAA1109Q2LD37 5005 aa11.32□□□□□ -0.6
TRIM54-203ENST00000485306 NCR2O95944 276 aa11.31□□□□□ -0.6
TRIM54-203ENST00000485306 RPS10P46783 165 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms