RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 RBFOX3A6NFN3 312 aa11.75□□□□□ -0.53
COL9A3-212ENST00000481800 TMEM262E9PQX1 116 aa11.75□□□□□ -0.53
COL9A3-212ENST00000481800 CHCHD7Q9BUK0 85 aa11.75□□□□□ -0.53
COL9A3-212ENST00000481800 KLK12Q9UKR0 248 aa11.75□□□□□ -0.53
COL9A3-212ENST00000481800 TRBV6-8A0A0A6YYG3 113 aa11.74□□□□□ -0.53
COL9A3-212ENST00000481800 IGLC6P0CF74 106 aa11.74□□□□□ -0.53
COL9A3-212ENST00000481800 CACNG7P62955 275 aa11.74□□□□□ -0.53
COL9A3-212ENST00000481800 TRBV20OR9-2A0A075B6H5 130 aa11.73□□□□□ -0.53
COL9A3-212ENST00000481800 F2Z2F3 143 aa11.73□□□□□ -0.53
COL9A3-212ENST00000481800 MGPP08493 103 aa11.73□□□□□ -0.53
COL9A3-212ENST00000481800 BLOC1S1P78537 153 aa11.73□□□□□ -0.53
COL9A3-212ENST00000481800 UBE2WQ96B02 151 aa11.73□□□□□ -0.53
COL9A3-212ENST00000481800 APOBP04114 4563 aaKnown RBP11.72□□□□□ -0.53
COL9A3-212ENST00000481800 TMEM97Q5BJF2 176 aa11.72□□□□□ -0.53
COL9A3-212ENST00000481800 ALKAL2Q6UX46 152 aa11.72□□□□□ -0.53
COL9A3-212ENST00000481800 KIF25-AS1Q9Y6Z4 181 aa11.72□□□□□ -0.53
COL9A3-212ENST00000481800 IGKV2D-24A0A075B6R9 120 aa11.71□□□□□ -0.53
COL9A3-212ENST00000481800 H7C1H1 209 aa11.71□□□□□ -0.53
COL9A3-212ENST00000481800 XGP55808 180 aa11.71□□□□□ -0.53
COL9A3-212ENST00000481800 CHCHD5Q9BSY4 110 aa11.71□□□□□ -0.53
COL9A3-212ENST00000481800 ABCA13Q86UQ4 5058 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 LECT2O14960 151 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 TRGC1P0CF51 173 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 PKIAP61925 76 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 Q0VG73 95 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 LYZL1Q6UWQ5 148 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 NUDT10Q8NFP7 164 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 NUDT11Q96G61 164 aa11.7□□□□□ -0.54
COL9A3-212ENST00000481800 EPM2AB3EWF7 344 aa11.69□□□□□ -0.54
COL9A3-212ENST00000481800 WFDC2Q14508 124 aa11.69□□□□□ -0.54
COL9A3-212ENST00000481800 BAALCQ8WXS3 180 aa11.69□□□□□ -0.54
COL9A3-212ENST00000481800 DNAJC30Q96LL9 226 aa11.69□□□□□ -0.54
COL9A3-212ENST00000481800 CRPP02741 224 aa11.68□□□□□ -0.54
COL9A3-212ENST00000481800 RPP21Q9H633 154 aaKnown RBP11.68□□□□□ -0.54
COL9A3-212ENST00000481800 M0QY20 66 aa11.67□□□□□ -0.54
COL9A3-212ENST00000481800 ANGP03950 147 aaKnown RBP11.67□□□□□ -0.54
COL9A3-212ENST00000481800 NTF3P20783 257 aa11.67□□□□□ -0.54
COL9A3-212ENST00000481800 SUMO4Q6EEV6 95 aa11.67□□□□□ -0.54
COL9A3-212ENST00000481800 C15orf54Q8N8G6 183 aa11.67□□□□□ -0.54
COL9A3-212ENST00000481800 OCC1Q8TAD7 63 aa11.67□□□□□ -0.54
COL9A3-212ENST00000481800 TMEM70Q9BUB7 260 aa11.67□□□□□ -0.54
COL9A3-212ENST00000481800 RNASE7Q9H1E1 156 aaKnown RBP11.67□□□□□ -0.54
COL9A3-212ENST00000481800 DPH3P1Q9H4G8 78 aa11.67□□□□□ -0.54
COL9A3-212ENST00000481800 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.66□□□□□ -0.54
COL9A3-212ENST00000481800 TRBV25-1A0A075B6N4 114 aa11.66□□□□□ -0.54
COL9A3-212ENST00000481800 TMEM250H0YL14 139 aa11.66□□□□□ -0.54
COL9A3-212ENST00000481800 MPV17L2Q567V2 206 aa11.66□□□□□ -0.54
COL9A3-212ENST00000481800 WDR73Q6P4I2 378 aa11.66□□□□□ -0.54
COL9A3-212ENST00000481800 Q8N976 141 aa11.66□□□□□ -0.54
COL9A3-212ENST00000481800 FRZBQ92765 325 aa11.66□□□□□ -0.54
COL9A3-212ENST00000481800 C1orf43Q9BWL3 253 aa11.66□□□□□ -0.54
COL9A3-212ENST00000481800 K7EN84 100 aa11.65□□□□□ -0.54
COL9A3-212ENST00000481800 CEBPGP53567 150 aa11.65□□□□□ -0.54
COL9A3-212ENST00000481800 TWIST1Q15672 202 aa11.65□□□□□ -0.54
COL9A3-212ENST00000481800 RASL11AQ6T310 242 aa11.65□□□□□ -0.54
COL9A3-212ENST00000481800 NTM-AS1Q6ZSK4 140 aa11.65□□□□□ -0.54
COL9A3-212ENST00000481800 CTRLP40313 264 aa11.64□□□□□ -0.55
COL9A3-212ENST00000481800 NKX2-5P52952 324 aaPredicted RBP11.64□□□□□ -0.55
COL9A3-212ENST00000481800 ATRAIDQ6UW56 229 aa11.64□□□□□ -0.55
COL9A3-212ENST00000481800 LYPD6BQ8NI32 183 aa11.64□□□□□ -0.55
COL9A3-212ENST00000481800 EIF5A2Q9GZV4 153 aaKnown RBP11.64□□□□□ -0.55
COL9A3-212ENST00000481800 IGHV1-24A0A0C4DH33 117 aa11.63□□□□□ -0.55
COL9A3-212ENST00000481800 GAGE6Q13070 117 aa11.63□□□□□ -0.55
COL9A3-212ENST00000481800 ENHOQ6UWT2 76 aa11.63□□□□□ -0.55
COL9A3-212ENST00000481800 GATCO43716 136 aaKnown RBP11.62□□□□□ -0.55
COL9A3-212ENST00000481800 SMR3BP02814 79 aaPredicted RBP11.62□□□□□ -0.55
COL9A3-212ENST00000481800 HAMPP81172 84 aa11.62□□□□□ -0.55
COL9A3-212ENST00000481800 IQCJQ1A5X6 159 aa11.62□□□□□ -0.55
COL9A3-212ENST00000481800 SMIM15Q7Z3B0 74 aa11.62□□□□□ -0.55
COL9A3-212ENST00000481800 NIT2Q9NQR4 276 aa11.62□□□□□ -0.55
COL9A3-212ENST00000481800 RBX1P62877 108 aa11.61□□□□□ -0.55
COL9A3-212ENST00000481800 MIAQ16674 131 aa11.61□□□□□ -0.55
COL9A3-212ENST00000481800 Q5VSD8 79 aa11.61□□□□□ -0.55
COL9A3-212ENST00000481800 CNFNQ9BYD5 112 aa11.61□□□□□ -0.55
COL9A3-212ENST00000481800 A8MWL6 223 aa11.6□□□□□ -0.55
COL9A3-212ENST00000481800 FAM229AH3BQW9 127 aa11.6□□□□□ -0.55
COL9A3-212ENST00000481800 C14orf177Q52M58 125 aa11.6□□□□□ -0.55
COL9A3-212ENST00000481800 FAM231DQ6ZW35 169 aa11.59□□□□□ -0.55
COL9A3-212ENST00000481800 LINC00269Q8N2A0 174 aa11.59□□□□□ -0.55
COL9A3-212ENST00000481800 SMIM7Q9BQ49 75 aa11.59□□□□□ -0.55
COL9A3-212ENST00000481800 TMEM243Q9BU79 118 aa11.59□□□□□ -0.55
COL9A3-212ENST00000481800 FAM30AQ9NZY2 134 aa11.59□□□□□ -0.55
COL9A3-212ENST00000481800 A0A1B0GVG6 124 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 HLA-DQA1P01909 254 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 COTL1Q14019 142 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 CLPSL2Q6UWE3 100 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 GTSF1Q8WW33 167 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 BORCS7Q96B45 105 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 PGLYRP4Q96LB8 373 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 FAM210AQ96ND0 272 aa11.58□□□□□ -0.56
COL9A3-212ENST00000481800 UBE2L6O14933 153 aa11.57□□□□□ -0.56
COL9A3-212ENST00000481800 NDUFS6O75380 124 aaKnown RBP11.57□□□□□ -0.56
COL9A3-212ENST00000481800 INAFM2P0DMQ5 153 aa11.57□□□□□ -0.56
COL9A3-212ENST00000481800 PRR34Q9NV39 138 aa11.57□□□□□ -0.56
COL9A3-212ENST00000481800 TRAV26-2A0A0B4J265 109 aa11.56□□□□□ -0.56
COL9A3-212ENST00000481800 ZNF727A8MUV8 499 aa11.56□□□□□ -0.56
COL9A3-212ENST00000481800 AMTP48728 403 aa11.56□□□□□ -0.56
COL9A3-212ENST00000481800 LINC01620Q4KN68 170 aa11.56□□□□□ -0.56
COL9A3-212ENST00000481800 CT83Q5H943 113 aa11.56□□□□□ -0.56
COL9A3-212ENST00000481800 GATD1Q8NB37 220 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms