RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 C11orf52Q96A22 123 aa8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 RMI2Q96E14 147 aa8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 SMIM12Q96EX1 92 aa8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 M0R381 172 aa7.99□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 CXCL1P09341 107 aa7.99□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 RPL35P42766 123 aaKnown RBP7.99□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 ENHOQ6UWT2 76 aa7.99□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 SCXQ7RTU7 201 aa7.99□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 CHAC1Q9BUX1 264 aa7.99□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 IGKV2D-24A0A075B6R9 120 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 TMSB15BA0A087X1C1 80 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 TRBV6-8A0A0A6YYG3 113 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 SNAI2O43623 268 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 RAB4BP61018 213 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 RPL36AP83881 106 aaKnown RBP7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 ELOBQ15370 118 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 NEXN-AS1Q8NBZ9 246 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 LYPD6BQ8NI32 183 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 RPL36ALQ969Q0 106 aaKnown RBP7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 UBE2WQ96B02 151 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 BIN3Q9NQY0 253 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 URGCP-MRPS24S4R325 110 aa7.98□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 RBFOX3A6NFN3 312 aa7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 OR5AL1P0C617 328 aa7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 RPL19P84098 196 aaKnown RBP7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 Q0VG73 95 aa7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 OR10AG1Q8NH19 301 aa7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 DEFB104AQ8WTQ1 72 aa7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 MED9Q9NWA0 146 aa7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 KIF25-AS1Q9Y6Z4 181 aa7.97□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 A0A087WX48 190 aa7.96□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 GNG4P50150 75 aa7.96□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 CIRBP-AS1Q8TBR5 109 aa7.96□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 DAZAP1Q96EP5 407 aaKnown RBP7.96□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 TMEM250H0YL14 139 aa7.95□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 J3QL48 77 aa7.95□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 NDUFS6O75380 124 aaKnown RBP7.95□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 CENPWQ5EE01 88 aa7.95□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 KRTAP26-1Q6PEX3 210 aa7.95□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 NTM-AS1Q6ZSK4 140 aa7.95□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 DERL1Q9BUN8 251 aa7.95□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 MPV17L2Q567V2 206 aa7.94□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 TEX261Q6UWH6 196 aa7.94□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 EIF5A2Q9GZV4 153 aaKnown RBP7.94□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 PRR34Q9NV39 138 aa7.94□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 FAT3Q8TDW7 4589 aa7.93□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 XKRY2A2RUG3 117 aa7.93□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 IGLV2-8P01709 118 aa7.93□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 RPS20P60866 119 aaKnown RBP7.93□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 C1orf43Q9BWL3 253 aa7.93□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 RAB19A4D1S5 217 aa7.92□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 TMEM262E9PQX1 116 aa7.92□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 C14orf177Q52M58 125 aa7.92□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 KCNIP4Q6PIL6 250 aa7.92□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 C15orf54Q8N8G6 183 aa7.92□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 FAM210AQ96ND0 272 aa7.92□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 MUC21A0A0G2JKD1 596 aa7.91□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 MUC21A0A140T8X8 626 aa7.91□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 P01737 135 aa7.91□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 PRSS1P07477 247 aa7.91□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 ZNF56Q15929 161 aa7.91□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 MIAQ16674 131 aa7.91□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 TMEM97Q5BJF2 176 aa7.91□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 PKHD1L1Q86WI1 4243 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 C19orf71A6NCJ1 209 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 USP17L23D6RBM5 183 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 M0QY20 66 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 OXTP01178 125 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 ANGP03950 147 aaKnown RBP7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 IGLC6P0CF74 106 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 PKIAP61925 76 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 RBX1P62877 108 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 IQCJQ1A5X6 159 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 SPANXN1Q5VSR9 72 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 DGAT2L7PQ6IED9 249 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 C9orf163Q8N9P6 203 aa7.9□□□□□ -1.14
MSH5-SAPCD1-205ENST00000476085 TRBV20OR9-2A0A075B6H5 130 aa7.89□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 CEBPGP53567 150 aa7.89□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 OR2D3Q8NGH3 330 aa7.89□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 CHCHD5Q9BSY4 110 aa7.89□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SMDT1Q9H4I9 107 aa7.89□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 F2Z2F3 143 aa7.88□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 CRPP02741 224 aa7.88□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SDIM1Q6ZPB5 146 aa7.88□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 OCC1Q8TAD7 63 aa7.88□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 A0A1B0GUV1 79 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 F5H697 171 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 PANO1I0J062 215 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SMIM17P0DL12 118 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 RAB14P61106 215 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 CACNG7P62955 275 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 PEA15Q15121 130 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 FAM74A3Q4VXF1 159 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 LINC00269Q8N2A0 174 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 FER1L6-AS1Q8NA97 138 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 AP1S3Q96PC3 154 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SMIM7Q9BQ49 75 aa7.87□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 TRBV25-1A0A075B6N4 114 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 ZNF727A8MUV8 499 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms