RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 H7C1H1 209 aa8.87□□□□□ -0.99
SYNE1-222ENST00000474655 GIG44P09565 113 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-222ENST00000474655 RIPPLY3P57055 190 aa8.87□□□□□ -0.99
SYNE1-222ENST00000474655 ANKRD39Q53RE8 183 aa8.87□□□□□ -0.99
SYNE1-222ENST00000474655 ZFP2Q6ZN57 461 aa8.87□□□□□ -0.99
SYNE1-222ENST00000474655 ERASQ7Z444 233 aa8.87□□□□□ -0.99
SYNE1-222ENST00000474655 SCGB3A1Q96QR1 104 aa8.87□□□□□ -0.99
SYNE1-222ENST00000474655 LURAP1LQ8IV03 231 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 JMJD1CQ15652 2540 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 DPM2O94777 84 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 IGKCP01834 107 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 PF4P02776 101 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 FGF6P10767 208 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 CFAP126Q5VTH2 177 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 NEGR1Q7Z3B1 354 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 STPG4Q8N801 248 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 NEXN-AS1Q8NBZ9 246 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 RNASE8Q8TDE3 154 aaKnown RBP8.86□□□□□ -0.99
SYNE1-222ENST00000474655 CYSLTR1Q9Y271 337 aa8.86□□□□□ -0.99
SYNE1-222ENST00000474655 RHODO00212 210 aa8.85□□□□□ -0.99
SYNE1-222ENST00000474655 AZU1P20160 251 aa8.85□□□□□ -0.99
SYNE1-222ENST00000474655 RHOHQ15669 191 aa8.85□□□□□ -0.99
SYNE1-222ENST00000474655 IGIPA6NJ69 53 aa8.84□□□□□ -0.99
SYNE1-222ENST00000474655 RS1O15537 224 aa8.84□□□□□ -0.99
SYNE1-222ENST00000474655 DLEU1O43261 78 aa8.84□□□□□ -0.99
SYNE1-222ENST00000474655 INSL3P51460 131 aa8.84□□□□□ -0.99
SYNE1-222ENST00000474655 BOD1L2Q8IYS8 172 aa8.84□□□□□ -0.99
SYNE1-222ENST00000474655 TMEM208Q9BTX3 173 aa8.84□□□□□ -0.99
SYNE1-222ENST00000474655 MRPL35Q9NZE8 188 aaKnown RBP8.84□□□□□ -0.99
SYNE1-222ENST00000474655 A0A1B0GV90 55 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 F8VRH5 84 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 I3L3M4 83 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 PLNP26678 52 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 CSNK1G2-AS1Q8NCQ2 148 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 TMEM263Q8WUH6 116 aaKnown RBP8.84□□□□□ -1
SYNE1-222ENST00000474655 BAALCQ8WXS3 180 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 TIMM17AQ99595 171 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 C1QTNF4Q9BXJ3 329 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 WFDC10AQ9H1F0 79 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 TP73-AS1Q9UF72 201 aa8.84□□□□□ -1
SYNE1-222ENST00000474655 TSHBP01222 138 aa8.83□□□□□ -1
SYNE1-222ENST00000474655 IGHV3-53P01767 116 aa8.83□□□□□ -1
SYNE1-222ENST00000474655 TMEM141Q96I45 108 aa8.83□□□□□ -1
SYNE1-222ENST00000474655 CITED1Q99966 193 aa8.83□□□□□ -1
SYNE1-222ENST00000474655 P0DMU3 169 aa8.82□□□□□ -1
SYNE1-222ENST00000474655 FAM231AP0DMU4 169 aa8.82□□□□□ -1
SYNE1-222ENST00000474655 FAM231CP0DMU5 169 aa8.82□□□□□ -1
SYNE1-222ENST00000474655 C2orf91Q6ZV80 131 aa8.82□□□□□ -1
SYNE1-222ENST00000474655 TP53TG1Q9Y2A0 90 aa8.82□□□□□ -1
SYNE1-222ENST00000474655 SIVA1O15304 175 aa8.81□□□□□ -1
SYNE1-222ENST00000474655 DAZ2Q13117 558 aaKnown RBP8.81□□□□□ -1
SYNE1-222ENST00000474655 COL5A1-AS1Q5SY13 56 aa8.81□□□□□ -1
SYNE1-222ENST00000474655 Q6ZSN1 163 aa8.81□□□□□ -1
SYNE1-222ENST00000474655 MRPL16Q9NX20 251 aaKnown RBP8.81□□□□□ -1
SYNE1-222ENST00000474655 CHTOPQ9Y3Y2 248 aaKnown RBP8.81□□□□□ -1
SYNE1-222ENST00000474655 TENM1Q9UKZ4 2725 aa8.81□□□□□ -1
SYNE1-222ENST00000474655 RPL39P62891 51 aaKnown RBP8.81□□□□□ -1
SYNE1-222ENST00000474655 ZC2HC1BQ5TFG8 222 aa8.81□□□□□ -1
SYNE1-222ENST00000474655 DNAJC30Q96LL9 226 aa8.81□□□□□ -1
SYNE1-222ENST00000474655 VWFP04275 2813 aa8.8□□□□□ -1
SYNE1-222ENST00000474655 IGHV3OR16-12A0A075B7B8 117 aa8.8□□□□□ -1
SYNE1-222ENST00000474655 IGHV3-73A0A0B4J1V6 119 aa8.8□□□□□ -1
SYNE1-222ENST00000474655 PLAC8L1A1L4L8 177 aa8.8□□□□□ -1
SYNE1-222ENST00000474655 PRSS29PA6NIE9 313 aa8.8□□□□□ -1
SYNE1-222ENST00000474655 C9orf66Q5T8R8 295 aa8.8□□□□□ -1
SYNE1-222ENST00000474655 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.8□□□□□ -1
SYNE1-222ENST00000474655 C20orf203Q8NBC4 194 aa8.8□□□□□ -1
SYNE1-222ENST00000474655 IGKV2D-26A0A0A0MRZ7 120 aa8.79□□□□□ -1
SYNE1-222ENST00000474655 RPL35AP18077 110 aaKnown RBP8.79□□□□□ -1
SYNE1-222ENST00000474655 BATFQ16520 125 aa8.79□□□□□ -1
SYNE1-222ENST00000474655 C12orf54Q6X4T0 127 aa8.79□□□□□ -1
SYNE1-222ENST00000474655 C16orf74Q96GX8 76 aa8.79□□□□□ -1
SYNE1-222ENST00000474655 TEP1Q99973 2627 aaKnown RBP8.79□□□□□ -1
SYNE1-222ENST00000474655 TNFRSF18Q9Y5U5 241 aa8.79□□□□□ -1
SYNE1-222ENST00000474655 HINT1P49773 126 aaPredicted RBP8.78□□□□□ -1
SYNE1-222ENST00000474655 PMVKQ15126 192 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 MPV17L2Q567V2 206 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 PCP2Q8IVA1 136 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 OVOL2Q9BRP0 275 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 GTSCR1Q86UQ5 136 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 CST9LQ9H4G1 147 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 ZMAT5Q9UDW3 170 aaKnown RBP8.78□□□□□ -1
SYNE1-222ENST00000474655 Q9UF83 564 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 PYGO1Q9Y3Y4 419 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 F8P00451 2351 aa8.78□□□□□ -1
SYNE1-222ENST00000474655 TRGV1A0A0A0MS02 117 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 TRAV4A0A0B4J268 109 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 NMUP48645 174 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 PAPPA-AS1Q5QFB9 102 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 BVES-AS1Q5T3Y7 98 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 Q6ZTI0 123 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 OR4C5Q8NGB2 326 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 SPATA3Q8NHX4 192 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 DEFB104AQ8WTQ1 72 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 NOTCH3Q9UM47 2321 aa8.77□□□□□ -1.01
SYNE1-222ENST00000474655 ATRQ13535 2644 aa8.76□□□□□ -1.01
SYNE1-222ENST00000474655 IGLV4-69A0A075B6H9 119 aa8.76□□□□□ -1.01
SYNE1-222ENST00000474655 NPSP0C0P6 89 aa8.76□□□□□ -1.01
SYNE1-222ENST00000474655 HIGD1BQ9P298 99 aa8.76□□□□□ -1.01
SYNE1-222ENST00000474655 TRBV10-1A0A0K0K1A3 114 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms