RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TMEM262E9PQX1 116 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 CXCL1P09341 107 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 RPL19P84098 196 aaKnown RBP12.96□□□□□ -0.33
COL9A3-210ENST00000472880 MEF2BQ02080 365 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-210ENST00000472880 ATRAIDQ6UW56 229 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 ALKAL2Q6UX46 152 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 SCXQ7RTU7 201 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 OR10AG1Q8NH19 301 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 DERL1Q9BUN8 251 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 C1orf43Q9BWL3 253 aa12.96□□□□□ -0.33
COL9A3-210ENST00000472880 TRBV6-8A0A0A6YYG3 113 aa12.95□□□□□ -0.34
COL9A3-210ENST00000472880 CRPP02741 224 aa12.95□□□□□ -0.34
COL9A3-210ENST00000472880 BCL2P10415 239 aa12.95□□□□□ -0.34
COL9A3-210ENST00000472880 NKX2-5P52952 324 aaPredicted RBP12.95□□□□□ -0.34
COL9A3-210ENST00000472880 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.95□□□□□ -0.34
COL9A3-210ENST00000472880 PDE6DO43924 150 aa12.94□□□□□ -0.34
COL9A3-210ENST00000472880 NEXN-AS1Q8NBZ9 246 aa12.94□□□□□ -0.34
COL9A3-210ENST00000472880 C14orf177Q52M58 125 aa12.93□□□□□ -0.34
COL9A3-210ENST00000472880 SPANXN1Q5VSR9 72 aa12.93□□□□□ -0.34
COL9A3-210ENST00000472880 PRR27Q6MZM9 219 aa12.93□□□□□ -0.34
COL9A3-210ENST00000472880 C15orf54Q8N8G6 183 aa12.93□□□□□ -0.34
COL9A3-210ENST00000472880 VAX2Q9UIW0 290 aa12.93□□□□□ -0.34
COL9A3-210ENST00000472880 SNAI2O43623 268 aa12.92□□□□□ -0.34
COL9A3-210ENST00000472880 PKIAP61925 76 aa12.92□□□□□ -0.34
COL9A3-210ENST00000472880 MPV17L2Q567V2 206 aa12.92□□□□□ -0.34
COL9A3-210ENST00000472880 CENPWQ5EE01 88 aa12.92□□□□□ -0.34
COL9A3-210ENST00000472880 DEFB104AQ8WTQ1 72 aa12.92□□□□□ -0.34
COL9A3-210ENST00000472880 CHAC1Q9BUX1 264 aa12.92□□□□□ -0.34
COL9A3-210ENST00000472880 MUC21A0A0G2JKD1 596 aa12.91□□□□□ -0.34
COL9A3-210ENST00000472880 MUC21A0A140T8X8 626 aa12.91□□□□□ -0.34
COL9A3-210ENST00000472880 F5H697 171 aa12.91□□□□□ -0.34
COL9A3-210ENST00000472880 ANGP03950 147 aaKnown RBP12.91□□□□□ -0.34
COL9A3-210ENST00000472880 OR5AL1P0C617 328 aa12.91□□□□□ -0.34
COL9A3-210ENST00000472880 TAGLN2P37802 199 aaKnown RBP12.91□□□□□ -0.34
COL9A3-210ENST00000472880 BLOC1S1P78537 153 aa12.91□□□□□ -0.34
COL9A3-210ENST00000472880 CHCHD5Q9BSY4 110 aa12.91□□□□□ -0.34
COL9A3-210ENST00000472880 IGLV2-8P01709 118 aa12.9□□□□□ -0.34
COL9A3-210ENST00000472880 ENHOQ6UWT2 76 aa12.9□□□□□ -0.34
COL9A3-210ENST00000472880 SSBP4Q9BWG4 385 aaPredicted RBP12.9□□□□□ -0.34
COL9A3-210ENST00000472880 MED9Q9NWA0 146 aa12.9□□□□□ -0.34
COL9A3-210ENST00000472880 RAB19A4D1S5 217 aa12.89□□□□□ -0.35
COL9A3-210ENST00000472880 HLA-DQA1P01909 254 aa12.89□□□□□ -0.35
COL9A3-210ENST00000472880 SMIM17P0DL12 118 aa12.89□□□□□ -0.35
COL9A3-210ENST00000472880 SSTP61278 116 aa12.89□□□□□ -0.35
COL9A3-210ENST00000472880 TMEM97Q5BJF2 176 aa12.89□□□□□ -0.35
COL9A3-210ENST00000472880 SMIM12Q96EX1 92 aa12.89□□□□□ -0.35
COL9A3-210ENST00000472880 AP1S3Q96PC3 154 aa12.89□□□□□ -0.35
COL9A3-210ENST00000472880 GNG4P50150 75 aa12.88□□□□□ -0.35
COL9A3-210ENST00000472880 LYPD6BQ8NI32 183 aa12.88□□□□□ -0.35
COL9A3-210ENST00000472880 TRBV20OR9-2A0A075B6H5 130 aa12.87□□□□□ -0.35
COL9A3-210ENST00000472880 KRTAP29-1A8MX34 341 aaPredicted RBP12.87□□□□□ -0.35
COL9A3-210ENST00000472880 CIRBP-AS1Q8TBR5 109 aa12.87□□□□□ -0.35
COL9A3-210ENST00000472880 MIAQ16674 131 aa12.86□□□□□ -0.35
COL9A3-210ENST00000472880 USP17L23D6RBM5 183 aa12.85□□□□□ -0.35
COL9A3-210ENST00000472880 DAZAP1Q96EP5 407 aaKnown RBP12.85□□□□□ -0.35
COL9A3-210ENST00000472880 TRBV25-1A0A075B6N4 114 aa12.84□□□□□ -0.35
COL9A3-210ENST00000472880 C19orf71A6NCJ1 209 aa12.84□□□□□ -0.35
COL9A3-210ENST00000472880 CLPSL2Q6UWE3 100 aa12.84□□□□□ -0.35
COL9A3-210ENST00000472880 NTM-AS1Q6ZSK4 140 aa12.84□□□□□ -0.35
COL9A3-210ENST00000472880 TPPP3Q9BW30 176 aa12.84□□□□□ -0.35
COL9A3-210ENST00000472880 KIF25-AS1Q9Y6Z4 181 aa12.84□□□□□ -0.35
COL9A3-210ENST00000472880 MGPP08493 103 aa12.83□□□□□ -0.36
COL9A3-210ENST00000472880 GAGE6Q13070 117 aa12.83□□□□□ -0.36
COL9A3-210ENST00000472880 RBX1P62877 108 aa12.82□□□□□ -0.36
COL9A3-210ENST00000472880 OR2D3Q8NGH3 330 aa12.82□□□□□ -0.36
COL9A3-210ENST00000472880 BIN3Q9NQY0 253 aa12.82□□□□□ -0.36
COL9A3-210ENST00000472880 TMEM250H0YL14 139 aa12.81□□□□□ -0.36
COL9A3-210ENST00000472880 H7C1H1 209 aa12.81□□□□□ -0.36
COL9A3-210ENST00000472880 GZMBP10144 247 aa12.81□□□□□ -0.36
COL9A3-210ENST00000472880 KRTAP10-4P60372 401 aaPredicted RBP12.81□□□□□ -0.36
COL9A3-210ENST00000472880 RPS20P60866 119 aaKnown RBP12.81□□□□□ -0.36
COL9A3-210ENST00000472880 LINC00269Q8N2A0 174 aa12.81□□□□□ -0.36
COL9A3-210ENST00000472880 FER1L6-AS1Q8NA97 138 aa12.81□□□□□ -0.36
COL9A3-210ENST00000472880 PRR34Q9NV39 138 aa12.81□□□□□ -0.36
COL9A3-210ENST00000472880 IGHV1-24A0A0C4DH33 117 aa12.8□□□□□ -0.36
COL9A3-210ENST00000472880 P01737 135 aa12.8□□□□□ -0.36
COL9A3-210ENST00000472880 PRSS1P07477 247 aa12.8□□□□□ -0.36
COL9A3-210ENST00000472880 IGLC6P0CF74 106 aa12.8□□□□□ -0.36
COL9A3-210ENST00000472880 IQCJQ1A5X6 159 aa12.8□□□□□ -0.36
COL9A3-210ENST00000472880 CACNG7P62955 275 aa12.79□□□□□ -0.36
COL9A3-210ENST00000472880 DGAT2L7PQ6IED9 249 aa12.79□□□□□ -0.36
COL9A3-210ENST00000472880 XKRY2A2RUG3 117 aa12.78□□□□□ -0.36
COL9A3-210ENST00000472880 K7EN84 100 aa12.78□□□□□ -0.36
COL9A3-210ENST00000472880 M0QY20 66 aa12.78□□□□□ -0.36
COL9A3-210ENST00000472880 SUMO4Q6EEV6 95 aa12.78□□□□□ -0.36
COL9A3-210ENST00000472880 OCC1Q8TAD7 63 aa12.78□□□□□ -0.36
COL9A3-210ENST00000472880 NUDT10Q8NFP7 164 aa12.77□□□□□ -0.37
COL9A3-210ENST00000472880 NUDT11Q96G61 164 aa12.77□□□□□ -0.37
COL9A3-210ENST00000472880 FAM210AQ96ND0 272 aa12.77□□□□□ -0.37
COL9A3-210ENST00000472880 EIF5A2Q9GZV4 153 aaKnown RBP12.77□□□□□ -0.37
COL9A3-210ENST00000472880 RPL37AP61513 92 aaKnown RBP12.76□□□□□ -0.37
COL9A3-210ENST00000472880 REG3AQ06141 175 aa12.76□□□□□ -0.37
COL9A3-210ENST00000472880 C9orf163Q8N9P6 203 aa12.76□□□□□ -0.37
COL9A3-210ENST00000472880 IGLV10-54A0A075B6I4 117 aa12.75□□□□□ -0.37
COL9A3-210ENST00000472880 NDUFS6O75380 124 aaKnown RBP12.75□□□□□ -0.37
COL9A3-210ENST00000472880 OXTP01178 125 aa12.75□□□□□ -0.37
COL9A3-210ENST00000472880 TRGC1P0CF51 173 aa12.75□□□□□ -0.37
COL9A3-210ENST00000472880 CEBPGP53567 150 aa12.75□□□□□ -0.37
COL9A3-210ENST00000472880 KRTAP26-1Q6PEX3 210 aa12.75□□□□□ -0.37
COL9A3-210ENST00000472880 TMEM243Q9BU79 118 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms