RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 TRBV6-1A0A0K0K1D8 114 aa11.41□□□□□ -0.58
SHH-205ENST00000472308 A0A1W2PRE2 83 aa11.41□□□□□ -0.58
SHH-205ENST00000472308 PEX7O00628 323 aa11.41□□□□□ -0.58
SHH-205ENST00000472308 TMEM97Q5BJF2 176 aa11.41□□□□□ -0.58
SHH-205ENST00000472308 FAM162BQ5T6X4 162 aa11.41□□□□□ -0.58
SHH-205ENST00000472308 STPG4Q8N801 248 aa11.41□□□□□ -0.58
SHH-205ENST00000472308 C15orf56Q8N910 161 aa11.41□□□□□ -0.58
SHH-205ENST00000472308 TRBV25-1A0A075B6N4 114 aa11.4□□□□□ -0.58
SHH-205ENST00000472308 TRAV8-4A0A0B4J246 113 aa11.4□□□□□ -0.58
SHH-205ENST00000472308 CXorf1O96002 111 aa11.4□□□□□ -0.58
SHH-205ENST00000472308 P01737 135 aa11.4□□□□□ -0.58
SHH-205ENST00000472308 RAB5CP51148 216 aa11.4□□□□□ -0.58
SHH-205ENST00000472308 IQCJQ1A5X6 159 aa11.4□□□□□ -0.58
SHH-205ENST00000472308 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.4□□□□□ -0.58
SHH-205ENST00000472308 KRTAP9-6A0A140TA67 174 aa11.39□□□□□ -0.59
SHH-205ENST00000472308 NDUFS6O75380 124 aaKnown RBP11.39□□□□□ -0.59
SHH-205ENST00000472308 PET100P0DJ07 73 aa11.39□□□□□ -0.59
SHH-205ENST00000472308 ZNF674Q2M3X9 581 aa11.39□□□□□ -0.59
SHH-205ENST00000472308 OR10AG1Q8NH19 301 aa11.39□□□□□ -0.59
SHH-205ENST00000472308 IGLV4-60A0A075B6I1 120 aa11.38□□□□□ -0.59
SHH-205ENST00000472308 IFNA7P01567 189 aa11.38□□□□□ -0.59
SHH-205ENST00000472308 CCDC32Q9BV29 185 aa11.38□□□□□ -0.59
SHH-205ENST00000472308 A0A096LNI7 61 aa11.36□□□□□ -0.59
SHH-205ENST00000472308 IGHV1-24A0A0C4DH33 117 aa11.36□□□□□ -0.59
SHH-205ENST00000472308 GZMBP10144 247 aa11.36□□□□□ -0.59
SHH-205ENST00000472308 RPS10P46783 165 aaKnown RBP11.36□□□□□ -0.59
SHH-205ENST00000472308 UBE2G2P60604 165 aa11.36□□□□□ -0.59
SHH-205ENST00000472308 MZT2BQ6NZ67 158 aa11.36□□□□□ -0.59
SHH-205ENST00000472308 INO80EQ8NBZ0 244 aaPredicted RBP11.36□□□□□ -0.59
SHH-205ENST00000472308 PSMG3Q9BT73 122 aaPredicted RBP11.36□□□□□ -0.59
SHH-205ENST00000472308 ZFP30Q9Y2G7 519 aa11.36□□□□□ -0.59
SHH-205ENST00000472308 ATP6V0CP27449 155 aa11.35□□□□□ -0.59
SHH-205ENST00000472308 F5H697 171 aa11.34□□□□□ -0.59
SHH-205ENST00000472308 HIGD2BQ4VC39 106 aa11.34□□□□□ -0.59
SHH-205ENST00000472308 HIST1H2BAQ96A08 127 aa11.34□□□□□ -0.59
SHH-205ENST00000472308 ACTR3CQ9C0K3 210 aaPredicted RBP11.34□□□□□ -0.59
SHH-205ENST00000472308 MUC21A0A140T8X8 626 aa11.33□□□□□ -0.6
SHH-205ENST00000472308 A0A1B0GUV1 79 aa11.33□□□□□ -0.6
SHH-205ENST00000472308 ZNF726P1Q15940 193 aa11.33□□□□□ -0.6
SHH-205ENST00000472308 FAM74A7A6NL05 159 aa11.32□□□□□ -0.6
SHH-205ENST00000472308 LTAP01374 205 aa11.32□□□□□ -0.6
SHH-205ENST00000472308 MBP02144 154 aa11.32□□□□□ -0.6
SHH-205ENST00000472308 Q6ZRP5 223 aa11.32□□□□□ -0.6
SHH-205ENST00000472308 FMC1Q96HJ9 113 aa11.32□□□□□ -0.6
SHH-205ENST00000472308 AQP10Q96PS8 301 aa11.32□□□□□ -0.6
SHH-205ENST00000472308 ZNF471Q9BX82 626 aaPredicted RBP11.32□□□□□ -0.6
SHH-205ENST00000472308 GAGE12HA6NDE8 117 aa11.31□□□□□ -0.6
SHH-205ENST00000472308 H7C1H1 209 aa11.31□□□□□ -0.6
SHH-205ENST00000472308 SNAI2O43623 268 aa11.31□□□□□ -0.6
SHH-205ENST00000472308 DEFA3P59666 94 aa11.31□□□□□ -0.6
SHH-205ENST00000472308 SERF2P84101 59 aa11.31□□□□□ -0.6
SHH-205ENST00000472308 ENKURQ8TC29 256 aa11.31□□□□□ -0.6
SHH-205ENST00000472308 TMEM243Q9BU79 118 aa11.3□□□□□ -0.6
SHH-205ENST00000472308 SSBP4Q9BWG4 385 aaPredicted RBP11.3□□□□□ -0.6
SHH-205ENST00000472308 TNFSF18Q9UNG2 199 aa11.3□□□□□ -0.6
SHH-205ENST00000472308 INMT-MINDY4F8WBC2 141 aa11.29□□□□□ -0.6
SHH-205ENST00000472308 CFAP161Q6P656 301 aa11.29□□□□□ -0.6
SHH-205ENST00000472308 GVQW2A0A096LPI5 108 aaPredicted RBP11.28□□□□□ -0.6
SHH-205ENST00000472308 M0QY20 66 aa11.28□□□□□ -0.6
SHH-205ENST00000472308 CXCL1P09341 107 aa11.28□□□□□ -0.6
SHH-205ENST00000472308 UBE2G1P62253 170 aa11.28□□□□□ -0.6
SHH-205ENST00000472308 LCE2AQ5TA79 106 aaPredicted RBP11.28□□□□□ -0.6
SHH-205ENST00000472308 SPANXN1Q5VSR9 72 aa11.28□□□□□ -0.6
SHH-205ENST00000472308 NKX6-2Q9C056 277 aaPredicted RBP11.28□□□□□ -0.6
SHH-205ENST00000472308 FAM231BA6NCW3 169 aa11.27□□□□□ -0.61
SHH-205ENST00000472308 SSNA1O43805 119 aa11.27□□□□□ -0.61
SHH-205ENST00000472308 OR5AL1P0C617 328 aa11.27□□□□□ -0.61
SHH-205ENST00000472308 SULT1A2P50226 295 aa11.27□□□□□ -0.61
SHH-205ENST00000472308 SSTP61278 116 aa11.27□□□□□ -0.61
SHH-205ENST00000472308 A6NHS1 94 aa11.26□□□□□ -0.61
SHH-205ENST00000472308 LINC00474Q9P2X8 69 aa11.26□□□□□ -0.61
SHH-205ENST00000472308 CTXND1A0A1B0GTU2 59 aa11.25□□□□□ -0.61
SHH-205ENST00000472308 AP1S3Q96PC3 154 aa11.25□□□□□ -0.61
SHH-205ENST00000472308 SMIM17P0DL12 118 aa11.24□□□□□ -0.61
SHH-205ENST00000472308 NKX2-5P52952 324 aaPredicted RBP11.24□□□□□ -0.61
SHH-205ENST00000472308 SUMO4Q6EEV6 95 aa11.24□□□□□ -0.61
SHH-205ENST00000472308 MARVELD1Q9BSK0 173 aa11.24□□□□□ -0.61
SHH-205ENST00000472308 IGKV3OR2-268A0A0C4DH90 116 aa11.23□□□□□ -0.61
SHH-205ENST00000472308 A0A0U1RQV1 116 aa11.23□□□□□ -0.61
SHH-205ENST00000472308 PGLYRP4Q96LB8 373 aa11.23□□□□□ -0.61
SHH-205ENST00000472308 MGPP08493 103 aa11.22□□□□□ -0.61
SHH-205ENST00000472308 IFITM3Q01628 133 aa11.22□□□□□ -0.61
SHH-205ENST00000472308 ZNF664Q8N3J9 261 aa11.22□□□□□ -0.61
SHH-205ENST00000472308 PRR26Q8N8Z3 221 aa11.22□□□□□ -0.61
SHH-205ENST00000472308 CHCHD10Q8WYQ3 142 aaPredicted RBP11.22□□□□□ -0.61
SHH-205ENST00000472308 PSORS1C2Q9UIG4 136 aa11.22□□□□□ -0.61
SHH-205ENST00000472308 LINC00526Q96FQ7 95 aa11.21□□□□□ -0.61
SHH-205ENST00000472308 MLST8Q9BVC4 326 aa11.21□□□□□ -0.61
SHH-205ENST00000472308 UBE2L6O14933 153 aa11.2□□□□□ -0.62
SHH-205ENST00000472308 AKR1C3P42330 323 aa11.2□□□□□ -0.62
SHH-205ENST00000472308 FOXI1Q12951 378 aa11.2□□□□□ -0.62
SHH-205ENST00000472308 TCEAL7Q9BRU2 100 aa11.2□□□□□ -0.62
SHH-205ENST00000472308 FHITP49789 147 aa11.19□□□□□ -0.62
SHH-205ENST00000472308 RPL7L1Q6DKI1 246 aaKnown RBP11.19□□□□□ -0.62
SHH-205ENST00000472308 UPK1BO75841 260 aa11.18□□□□□ -0.62
SHH-205ENST00000472308 AMTP48728 403 aa11.18□□□□□ -0.62
SHH-205ENST00000472308 CACNG7P62955 275 aa11.18□□□□□ -0.62
SHH-205ENST00000472308 RASL11AQ6T310 242 aa11.18□□□□□ -0.62
SHH-205ENST00000472308 CARD19Q96LW7 228 aa11.18□□□□□ -0.62
SHH-205ENST00000472308 TRAV26-2A0A0B4J265 109 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms