RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 TRAV4A0A0B4J268 109 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 RHODO00212 210 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 CIDEAO60543 219 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 NUDT3O95989 172 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 RAB5AP20339 215 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 EVI2AP22794 236 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 RAB4BP61018 213 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 TMEM136Q6ZRR5 245 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 DPH3P1Q9H4G8 78 aa6.29□□□□□ -1.4
SF3A1-206ENST00000471037 GAGE12BA1L429 117 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 J3QL48 77 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 RS1O15537 224 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 GAGE7O76087 117 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 GAGE12FP0CL80 117 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 GAGE12GP0CL81 117 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 GAGE12IP0CL82 117 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 TTC32Q5I0X7 151 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 CFAP126Q5VTH2 177 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 FAM104BQ5XKR9 115 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 ZFP2Q6ZN57 461 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 SPATA12Q7Z6I5 190 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 C14orf178Q8N769 122 aaPredicted RBP6.28□□□□□ -1.4
SF3A1-206ENST00000471037 FRZBQ92765 325 aa6.28□□□□□ -1.4
SF3A1-206ENST00000471037 A0A087WWL8 130 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 CRYGDP07320 174 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 BTF3P20290 206 aaKnown RBP6.27□□□□□ -1.41
SF3A1-206ENST00000471037 RPS10P46783 165 aaKnown RBP6.27□□□□□ -1.41
SF3A1-206ENST00000471037 FAM74A4Q5TZK3 123 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 OR4C5Q8NGB2 326 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 UPK3BQ9BT76 320 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 KRTAP1-5Q9BYS1 174 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 Q9H8V8 135 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 JPT2Q9H910 190 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 TRAPPC1Q9Y5R8 145 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 KIF25-AS1Q9Y6Z4 181 aa6.27□□□□□ -1.41
SF3A1-206ENST00000471037 APCSP02743 223 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 MGPP08493 103 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 RAB4AP20338 218 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 LINC00315P59091 139 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 UFSP1Q6NVU6 142 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 AMN1Q8IY45 258 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.26□□□□□ -1.41
SF3A1-206ENST00000471037 MRAP2Q96G30 205 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 RNF185Q96GF1 192 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 SAMD10Q9BYL1 202 aa6.26□□□□□ -1.41
SF3A1-206ENST00000471037 MRPL18Q9H0U6 180 aaKnown RBP6.26□□□□□ -1.41
SF3A1-206ENST00000471037 IGHV3-53P01767 116 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 PPBPP02775 128 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 KRTAP10-2P60368 255 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 FABP9Q0Z7S8 132 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 SLAQ13239 276 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 ZNF56Q15929 161 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 MRPL51Q4U2R6 128 aaKnown RBP6.25□□□□□ -1.41
SF3A1-206ENST00000471037 ZNF479Q96JC4 524 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 PGPEP1Q9NXJ5 209 aa6.25□□□□□ -1.41
SF3A1-206ENST00000471037 TRAV26-1A0A087WT03 109 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 IGHV3-73A0A0B4J1V6 119 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 TRGV4A0A0C4DH28 118 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 F5H697 171 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 H3BNG1 76 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 H7C1H1 209 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 PPP1R17O96001 155 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 TRGC2P03986 189 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 CKS2P33552 79 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 SUMO4Q6EEV6 95 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 ORMDL3Q8N138 153 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 MRPS16Q9Y3D3 137 aaKnown RBP6.24□□□□□ -1.41
SF3A1-206ENST00000471037 HERC1Q15751 4861 aa6.24□□□□□ -1.41
SF3A1-206ENST00000471037 TRBV6-4A0A1B0GX49 114 aa6.23□□□□□ -1.41
SF3A1-206ENST00000471037 D6R8Y8 96 aa6.23□□□□□ -1.41
SF3A1-206ENST00000471037 GATA1P15976 413 aaPredicted RBP6.23□□□□□ -1.41
SF3A1-206ENST00000471037 HOXA5P20719 270 aa6.23□□□□□ -1.41
SF3A1-206ENST00000471037 FHL2Q14192 279 aa6.23□□□□□ -1.41
SF3A1-206ENST00000471037 ESRGQ1W209 222 aa6.23□□□□□ -1.41
SF3A1-206ENST00000471037 LAMTOR2Q9Y2Q5 125 aa6.23□□□□□ -1.41
SF3A1-206ENST00000471037 TRAV26-2A0A0B4J265 109 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 TRBV10-1A0A0K0K1A3 114 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 C1orf196B1AJZ1 125 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 K7EQD1 137 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 M0QY20 66 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 PHOX2AO14813 284 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 RHOHQ15669 191 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 KIAA1644Q3SXP7 199 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 PRELID3AQ96N28 172 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 PRO0255Q9UI72 69 aa6.22□□□□□ -1.41
SF3A1-206ENST00000471037 A0A0J9YY99 117 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 EPM2AB3EWF7 344 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 SMKR1H3BMG3 65 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 NCR2O95944 276 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 SRIP30626 198 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 OR10J3Q5JRS4 329 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 Q6ZRN7 208 aaPredicted RBP6.21□□□□□ -1.42
SF3A1-206ENST00000471037 Q6ZSN1 163 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 SLC25A29Q8N8R3 303 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 NRACQ8N912 160 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 DNAJC30Q96LL9 226 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 PRADC1Q9BSG0 188 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 ALKBH7Q9BT30 221 aaPredicted RBP6.21□□□□□ -1.42
SF3A1-206ENST00000471037 NIT2Q9NQR4 276 aa6.21□□□□□ -1.42
SF3A1-206ENST00000471037 HHLA3Q9XRX5 114 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms