RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 OR10AG1Q8NH19 301 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 PRSS3P2Q8NHM4 247 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 KIR2DL4Q99706 377 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 TM2D3Q9BRN9 247 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 MAP1LC3AQ9H492 121 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 EDA2RQ9HAV5 297 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 MDFICQ9P1T7 246 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 PRO0255Q9UI72 69 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 TGIF2-C20orf24A0A0A6YYL0 155 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 IGHV4-28A0A0C4DH34 117 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 H3BNG1 76 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 K7EIL1 84 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 VCYO14598 125 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 RS1O15537 224 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 MGPP08493 103 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 EMP1P54849 157 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 TCTAP57738 103 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 RPL32P62910 135 aaKnown RBP4.17□□□□□ -1.74
SYNE1-219ENST00000469439 RHOHQ15669 191 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 FAM74A4Q5TZK3 123 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 DAZ4Q86SG3 579 aaKnown RBP4.17□□□□□ -1.74
SYNE1-219ENST00000469439 C14orf178Q8N769 122 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-219ENST00000469439 NRACQ8N912 160 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 C11orf45Q8TAV5 145 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 PRELID3AQ96N28 172 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 ST20Q9HBF5 79 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 NIT2Q9NQR4 276 aa4.17□□□□□ -1.74
SYNE1-219ENST00000469439 DAZ3Q9NR90 486 aaKnown RBP4.17□□□□□ -1.74
SYNE1-219ENST00000469439 ZFHX3Q15911 3703 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 GAGE7O76087 117 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 NCR2O95944 276 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 IGHV3-53P01767 116 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 TRGC2P03986 189 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 GAGE12FP0CL80 117 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 GAGE12GP0CL81 117 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 GAGE12IP0CL82 117 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 DEFB130BP0DP73 79 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 DEFB130AP0DP74 79 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 EVI2AP22794 236 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 SSTP61278 116 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 DEFA6Q01524 100 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 ORMDL2Q53FV1 153 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 PAPPA-AS1Q5QFB9 102 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 FAM222AQ5U5X8 452 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 CFAP126Q5VTH2 177 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 FA2HQ7L5A8 372 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 BAGE3Q86Y29 109 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 POM121L12Q8N7R1 296 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 Q8NAQ8 132 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 CHCHD1Q96BP2 118 aaKnown RBP4.16□□□□□ -1.74
SYNE1-219ENST00000469439 YPEL4Q96NS1 127 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 HHLA3Q9XRX5 114 aa4.16□□□□□ -1.74
SYNE1-219ENST00000469439 FBN1P35555 2871 aaKnown RBP4.16□□□□□ -1.74
SYNE1-219ENST00000469439 TRAV26-1A0A087WT03 109 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 TRAV10A0A0B4J240 114 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 TRBV6-5A0A0K0K1A5 114 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 PRSS47A8MTI9 375 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 SCO1O75880 301 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 CRYGDP07320 174 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 RBMY1A1P0DJD3 496 aaKnown RBP4.15□□□□□ -1.75
SYNE1-219ENST00000469439 RBMY1CP0DJD4 496 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 PRB4P10163 310 aaPredicted RBP4.15□□□□□ -1.75
SYNE1-219ENST00000469439 S100A2P29034 98 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 FCER1GP30273 86 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 Q0VG73 95 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 RBMY1FQ15415 496 aaKnown RBP4.15□□□□□ -1.75
SYNE1-219ENST00000469439 MRPL23Q16540 153 aaKnown RBP4.15□□□□□ -1.75
SYNE1-219ENST00000469439 SBSPONQ8IVN8 264 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 AMN1Q8IY45 258 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 LINC00612Q8N6U2 182 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 C15orf53Q8NAA6 179 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 PACRGQ96M98 296 aaPredicted RBP4.15□□□□□ -1.75
SYNE1-219ENST00000469439 KRTAP2-2Q9BYT5 123 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 MRPL16Q9NX20 251 aaKnown RBP4.15□□□□□ -1.75
SYNE1-219ENST00000469439 KLK5Q9Y337 293 aaPredicted RBP4.15□□□□□ -1.75
SYNE1-219ENST00000469439 U3KQK5 164 aa4.15□□□□□ -1.75
SYNE1-219ENST00000469439 TRBV7-3A0A075B6L6 115 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 D6R8Y8 96 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 K7EQD1 137 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 HSBP1O75506 76 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 LINC00614P0C842 121 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 SRIP30626 198 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 SUMO2P61956 95 aaKnown RBP4.14□□□□□ -1.75
SYNE1-219ENST00000469439 COTL1Q14019 142 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 MRPL51Q4U2R6 128 aaKnown RBP4.14□□□□□ -1.75
SYNE1-219ENST00000469439 C10orf25Q5T742 122 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 Q6ZTI0 123 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 ALKBH7Q9BT30 221 aaPredicted RBP4.14□□□□□ -1.75
SYNE1-219ENST00000469439 ICOSQ9Y6W8 199 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 CUBNO60494 3623 aa4.14□□□□□ -1.75
SYNE1-219ENST00000469439 STAB1Q9NY15 2570 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 MUC21A0A0G2JKD1 596 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 MUC21A0A140T8X8 626 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 NUPR2A6NF83 97 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 F5H768 121 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 H7C423 109 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 I3L3M4 83 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 GATA1P15976 413 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-219ENST00000469439 SAMD10Q9BYL1 202 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 GTSF1LQ9H1H1 148 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms