RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 NEXN-AS1Q8NBZ9 246 aa7.58□□□□□ -1.2
MSX1-202ENST00000468421 URB1-AS1Q96HZ7 61 aa7.58□□□□□ -1.2
MSX1-202ENST00000468421 LAMTOR2Q9Y2Q5 125 aa7.58□□□□□ -1.2
MSX1-202ENST00000468421 TENM3Q9P273 2699 aa7.58□□□□□ -1.2
MSX1-202ENST00000468421 LOC389332A0A1B0GUA5 103 aa7.57□□□□□ -1.2
MSX1-202ENST00000468421 NUPR1O60356 82 aa7.57□□□□□ -1.2
MSX1-202ENST00000468421 CIDEAO60543 219 aa7.57□□□□□ -1.2
MSX1-202ENST00000468421 MAP1LC3AQ9H492 121 aa7.57□□□□□ -1.2
MSX1-202ENST00000468421 IGLV2-18A0A075B6J9 118 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 TRBV6-5A0A0K0K1A5 114 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 LOC100131303A0A0U1RQF7 123 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 H7C1H1 209 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 SERF1AO75920 110 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 ATP5G1P05496 136 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 IFI27P40305 119 aaPredicted RBP7.56□□□□□ -1.2
MSX1-202ENST00000468421 NANOS2P60321 138 aaKnown RBP7.56□□□□□ -1.2
MSX1-202ENST00000468421 SUMO2P61956 95 aaKnown RBP7.56□□□□□ -1.2
MSX1-202ENST00000468421 COA6Q5JTJ3 125 aaKnown RBP7.56□□□□□ -1.2
MSX1-202ENST00000468421 Q6ZTC4 211 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 NIT2Q9NQR4 276 aa7.56□□□□□ -1.2
MSX1-202ENST00000468421 PRKDCP78527 4128 aaKnown RBP7.55□□□□□ -1.2
MSX1-202ENST00000468421 TRBV6-4A0A1B0GX49 114 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 SDHAF1A6NFY7 115 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 PRSS47A8MTI9 375 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 HTN3P15516 51 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 POLR2KP53803 58 aaKnown RBP7.55□□□□□ -1.2
MSX1-202ENST00000468421 NEGR1Q7Z3B1 354 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 BAGE3Q86Y29 109 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 C20orf78Q9BR46 151 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 TMEM70Q9BUB7 260 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 SMIM2Q9BVW6 85 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 ST20Q9HBF5 79 aa7.55□□□□□ -1.2
MSX1-202ENST00000468421 PPP1R17O96001 155 aa7.54□□□□□ -1.2
MSX1-202ENST00000468421 CRYBA4P53673 196 aa7.54□□□□□ -1.2
MSX1-202ENST00000468421 RHOHQ15669 191 aa7.54□□□□□ -1.2
MSX1-202ENST00000468421 RNASEKQ6P5S7 137 aaKnown RBP7.54□□□□□ -1.2
MSX1-202ENST00000468421 NIT1Q86X76 327 aa7.54□□□□□ -1.2
MSX1-202ENST00000468421 C11orf45Q8TAV5 145 aa7.54□□□□□ -1.2
MSX1-202ENST00000468421 DEFB104AQ8WTQ1 72 aa7.54□□□□□ -1.2
MSX1-202ENST00000468421 TRBV10-1A0A0K0K1A3 114 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 GAGE12JA6NER3 117 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 C5orf52A6NGY3 159 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 F5H768 121 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 S100A6P06703 90 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 NHLRC4P0CG21 123 aaPredicted RBP7.53□□□□□ -1.2
MSX1-202ENST00000468421 SNRPEP62304 92 aaKnown RBP7.53□□□□□ -1.2
MSX1-202ENST00000468421 RPL32P62910 135 aaKnown RBP7.53□□□□□ -1.2
MSX1-202ENST00000468421 GAGE1Q13065 139 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 GAGE4Q13068 117 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 GAGE5Q13069 117 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 GAGE13Q4V321 117 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 Q8N8P6 123 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 ZNRF2Q8NHG8 242 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 PRSS3P2Q8NHM4 247 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 VSIG2Q96IQ7 327 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 DNAJC30Q96LL9 226 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 PRO0255Q9UI72 69 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 HHLA3Q9XRX5 114 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 TNFRSF18Q9Y5U5 241 aa7.53□□□□□ -1.2
MSX1-202ENST00000468421 IGHV3-38A0A0C4DH36 116 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 A0A0J9YY99 117 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 LINC01546A6NGU7 62 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 TCAPO15273 167 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 LINC00614P0C842 121 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 LINC00694P0DN24 101 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 ESDP10768 282 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 PMCHP20382 165 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 RPL36AP83881 106 aaKnown RBP7.52□□□□□ -1.21
MSX1-202ENST00000468421 PDZD11Q5EBL8 140 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 FA2HQ7L5A8 372 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 PHLDA1Q8WV24 401 aaPredicted RBP7.52□□□□□ -1.21
MSX1-202ENST00000468421 RPL36ALQ969Q0 106 aaKnown RBP7.52□□□□□ -1.21
MSX1-202ENST00000468421 PRADC1Q9BSG0 188 aa7.52□□□□□ -1.21
MSX1-202ENST00000468421 NXT2Q9NPJ8 142 aaKnown RBP7.52□□□□□ -1.21
MSX1-202ENST00000468421 TRBV7-3A0A075B6L6 115 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 TRAV26-1A0A087WT03 109 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 TRBV27A0A0K0K1C4 114 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 PAX4O43316 350 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 GYPEP15421 78 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 UBE2D3P61077 147 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 UBE2D2P62837 147 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 PMCHL1Q16048 86 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 HIST3H2BBQ8N257 126 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 FAM19A2Q8N3H0 131 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 CHCHD1Q96BP2 118 aaKnown RBP7.51□□□□□ -1.21
MSX1-202ENST00000468421 AP5S1Q9NUS5 200 aa7.51□□□□□ -1.21
MSX1-202ENST00000468421 A0A096LNJ9 63 aa7.5□□□□□ -1.21
MSX1-202ENST00000468421 IFITM10A6NMD0 228 aa7.5□□□□□ -1.21
MSX1-202ENST00000468421 I3L3M4 83 aa7.5□□□□□ -1.21
MSX1-202ENST00000468421 VCYO14598 125 aa7.5□□□□□ -1.21
MSX1-202ENST00000468421 HSBP1O75506 76 aa7.5□□□□□ -1.21
MSX1-202ENST00000468421 TSHBP01222 138 aa7.5□□□□□ -1.21
MSX1-202ENST00000468421 DEFB131BA0A096LNP1 70 aa7.49□□□□□ -1.21
MSX1-202ENST00000468421 IGHV1-24A0A0C4DH33 117 aa7.49□□□□□ -1.21
MSX1-202ENST00000468421 AMTP48728 403 aa7.49□□□□□ -1.21
MSX1-202ENST00000468421 A0A096LPF7 62 aa7.48□□□□□ -1.21
MSX1-202ENST00000468421 TRAV10A0A0B4J240 114 aa7.48□□□□□ -1.21
MSX1-202ENST00000468421 LAGE3Q14657 143 aa7.48□□□□□ -1.21
MSX1-202ENST00000468421 NTM-AS1Q6ZSK4 140 aa7.48□□□□□ -1.21
MSX1-202ENST00000468421 KIR2DL4Q99706 377 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms