RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 C6orf223Q8N319 242 aa7.92□□□□□ -1.14
CUX1-207ENST00000465461 TRAV8-6A0A0B4J262 113 aa7.91□□□□□ -1.14
CUX1-207ENST00000465461 TTC32Q5I0X7 151 aa7.91□□□□□ -1.14
CUX1-207ENST00000465461 NUP35Q8NFH5 326 aa7.91□□□□□ -1.14
CUX1-207ENST00000465461 GFRA4Q9GZZ7 299 aa7.91□□□□□ -1.14
CUX1-207ENST00000465461 DNAH10OSP0CZ25 163 aa7.9□□□□□ -1.14
CUX1-207ENST00000465461 ADCYAP1P18509 176 aa7.9□□□□□ -1.14
CUX1-207ENST00000465461 TNP2Q05952 138 aa7.9□□□□□ -1.14
CUX1-207ENST00000465461 COMMD7Q86VX2 200 aa7.9□□□□□ -1.14
CUX1-207ENST00000465461 GATD1Q8NB37 220 aa7.9□□□□□ -1.14
CUX1-207ENST00000465461 BORCS7Q96B45 105 aa7.9□□□□□ -1.14
CUX1-207ENST00000465461 A0A1B0GUT8 65 aa7.89□□□□□ -1.15
CUX1-207ENST00000465461 SMIM27A0A1W2PRY6 76 aa7.89□□□□□ -1.15
CUX1-207ENST00000465461 GAS8-AS1O95177 125 aa7.89□□□□□ -1.15
CUX1-207ENST00000465461 RASL11AQ6T310 242 aa7.89□□□□□ -1.15
CUX1-207ENST00000465461 NAT8BQ9UHF3 227 aa7.89□□□□□ -1.15
CUX1-207ENST00000465461 DNAH10Q8IVF4 4471 aa7.89□□□□□ -1.15
CUX1-207ENST00000465461 EPPK1P58107 5090 aaKnown RBP7.88□□□□□ -1.15
CUX1-207ENST00000465461 TMEM218A2RU14 115 aa7.88□□□□□ -1.15
CUX1-207ENST00000465461 FAM231BA6NCW3 169 aa7.88□□□□□ -1.15
CUX1-207ENST00000465461 LINC01556Q5JQF7 62 aa7.88□□□□□ -1.15
CUX1-207ENST00000465461 NTM-AS1Q6ZSK4 140 aa7.88□□□□□ -1.15
CUX1-207ENST00000465461 LINC00336Q6ZUF6 198 aa7.88□□□□□ -1.15
CUX1-207ENST00000465461 SMIM15Q7Z3B0 74 aa7.88□□□□□ -1.15
CUX1-207ENST00000465461 RPL39LQ96EH5 51 aaKnown RBP7.88□□□□□ -1.15
CUX1-207ENST00000465461 DNAH2Q9P225 4427 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 TRAV9-2A0A087WT02 112 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 A0A087WWC5 75 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 H7C1H1 209 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 RIGQ13278 110 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 UQCC3Q6UW78 93 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 AMN1Q8IY45 258 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 RNF185Q96GF1 192 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 DNAJC30Q96LL9 226 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 NIT2Q9NQR4 276 aa7.87□□□□□ -1.15
CUX1-207ENST00000465461 TRBV6-8A0A0A6YYG3 113 aa7.86□□□□□ -1.15
CUX1-207ENST00000465461 A0A1B0GVY2 172 aa7.86□□□□□ -1.15
CUX1-207ENST00000465461 F8W036 122 aa7.86□□□□□ -1.15
CUX1-207ENST00000465461 RAB4AP20338 218 aa7.86□□□□□ -1.15
CUX1-207ENST00000465461 CAMPP49913 170 aa7.86□□□□□ -1.15
CUX1-207ENST00000465461 MRPL54Q6P161 138 aaKnown RBP7.86□□□□□ -1.15
CUX1-207ENST00000465461 Q6ZRN7 208 aaPredicted RBP7.86□□□□□ -1.15
CUX1-207ENST00000465461 DAZ4Q86SG3 579 aaKnown RBP7.86□□□□□ -1.15
CUX1-207ENST00000465461 NIT1Q86X76 327 aa7.86□□□□□ -1.15
CUX1-207ENST00000465461 TMEM191AQ9H0A3 160 aa7.86□□□□□ -1.15
CUX1-207ENST00000465461 DAZ3Q9NR90 486 aaKnown RBP7.86□□□□□ -1.15
CUX1-207ENST00000465461 LINC00862A6NCI5 91 aa7.85□□□□□ -1.15
CUX1-207ENST00000465461 TMEM262E9PQX1 116 aa7.85□□□□□ -1.15
CUX1-207ENST00000465461 SMKR1H3BMG3 65 aa7.85□□□□□ -1.15
CUX1-207ENST00000465461 PNRC1Q12796 327 aaPredicted RBP7.85□□□□□ -1.15
CUX1-207ENST00000465461 Q9HAA7 133 aa7.85□□□□□ -1.15
CUX1-207ENST00000465461 FRAS1Q86XX4 4008 aa7.85□□□□□ -1.15
CUX1-207ENST00000465461 IBA57-AS1B1ANH7 110 aa7.84□□□□□ -1.15
CUX1-207ENST00000465461 NCR2O95944 276 aa7.84□□□□□ -1.15
CUX1-207ENST00000465461 RPS10P46783 165 aaKnown RBP7.84□□□□□ -1.15
CUX1-207ENST00000465461 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.84□□□□□ -1.15
CUX1-207ENST00000465461 CHCHD5Q9BSY4 110 aa7.84□□□□□ -1.15
CUX1-207ENST00000465461 PPP1R2P9O14990 202 aa7.83□□□□□ -1.16
CUX1-207ENST00000465461 MT-ND4LP03901 98 aa7.83□□□□□ -1.16
CUX1-207ENST00000465461 GAGE6Q13070 117 aa7.83□□□□□ -1.16
CUX1-207ENST00000465461 C10orf126Q8N4M7 172 aa7.83□□□□□ -1.16
CUX1-207ENST00000465461 KLK12Q9UKR0 248 aa7.83□□□□□ -1.16
CUX1-207ENST00000465461 URGCP-MRPS24S4R325 110 aa7.83□□□□□ -1.16
CUX1-207ENST00000465461 FUSP35637 526 aaKnown RBP eCLIP7.82□□□□□ -1.16
CUX1-207ENST00000465461 MPV17L2Q567V2 206 aa7.82□□□□□ -1.16
CUX1-207ENST00000465461 Q8N976 141 aa7.82□□□□□ -1.16
CUX1-207ENST00000465461 ANAPC16Q96DE5 110 aa7.82□□□□□ -1.16
CUX1-207ENST00000465461 SEC11CQ9BY50 192 aa7.82□□□□□ -1.16
CUX1-207ENST00000465461 TRBV25-1A0A075B6N4 114 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 A0A087WX48 190 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 IGHV1-24A0A0C4DH33 117 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 A0A1B0GXF2 115 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 SDHAF1A6NFY7 115 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 K7EP13 123 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 HBBP68871 147 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 MRPL51Q4U2R6 128 aaKnown RBP7.81□□□□□ -1.16
CUX1-207ENST00000465461 FAM104BQ5XKR9 115 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 ATRAIDQ6UW56 229 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 DNAH17Q9UFH2 4485 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 FAT2Q9NYQ8 4349 aa7.81□□□□□ -1.16
CUX1-207ENST00000465461 BTF3P20290 206 aaKnown RBP7.8□□□□□ -1.16
CUX1-207ENST00000465461 AMTP48728 403 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 COTL1Q14019 142 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 IQCJQ1A5X6 159 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 TMEM97Q5BJF2 176 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 KCNIP4Q6PIL6 250 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 NFE4Q86UQ8 179 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 FRZBQ92765 325 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 UBE2WQ96B02 151 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 MRAP2Q96G30 205 aa7.8□□□□□ -1.16
CUX1-207ENST00000465461 TRBV6-5A0A0K0K1A5 114 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 ANGP03950 147 aaKnown RBP7.79□□□□□ -1.16
CUX1-207ENST00000465461 PMCHP20382 165 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 RBX1P62877 108 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 C10orf91Q5T1B1 145 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 CLPSL2Q6UWE3 100 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 SPATA12Q7Z6I5 190 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 NRACQ8N912 160 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 TMEM243Q9BU79 118 aa7.79□□□□□ -1.16
CUX1-207ENST00000465461 ST20Q9HBF5 79 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms